RNA id: CI01000306_01633237_01635512.mRNA


Basic Information

Item Value
RNA id CI01000306_01633237_01635512.mRNA
length 2070
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000306_01633237_01635512
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1633073 ~ 1636773 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGCAAATGGACAAAGATTTAAAATAGCGGATTATTTTTCCCTCAGAATGTGCAGAATTATGCTTTGGGATGATGGATAATCAACATAGAAGAACTGTTAATGTGAGTAAACGAGCACGTTTAAAAAAATAAATAAATAAATAAAATAAAAAATACTTAGAAATGTGTGTGAATGAGCTAAACAGCGCTGTGGAAAATAATGTGTTTACTATACACGATTTTCATAAACCAAGAAAGCGTATAAAATAATAAATAATCGACAGACAAGCTAAAATACAACAGAATTACCCATGGTGCACTGTTTTGTGCACTAATGTTCGAACTATTTAACTAACATGACACAATTAAAACGAAAATTCTGTCATTTATTACTCACCCTCATGTCGTTCCAAACCCGTAAGACTTTCGTTCATCTTCGGAACACAAATTAAGATTTCTGTCCTTCCATAGCCTTCGCAACTTCCACTTTCAATGTATTTTAGACATCATTAAAGTAACCCATTAAAGTAATCCATTCCAGTAGTTTAACCTCAGTTTTATGAAGCGACATGGGTGCTTCGTTTGTGTAAAAAGCATAATTTATCACTTTATTTACAAAGTATTAATTTCCAACGCACCTTCACGCGAGCATCACAACGTATGCGTGTTGAGCAGCCGTTATTTCGTGAACGCGCGATTTAGATTAACAACGGTTTTCCTATAGACGAATATTTGCCCGTTCACACAAAGGACGATAACTATAATGAAAACGATAAATAGTTCTAAAAATCGTTATACATACAAAAGAATAGCAGAGTTCACACCACAACTAAAACTATAAATGCACAGAGAAACAATATTGTTGGAATCACTTTCGGATGTTTTTTTCAGCTAATGAACGATAAAAACATTGACAGCCAATCAGAGTCCATCCTGCTTTAAAGAGCGCGAGCATTTAAAGTGACAGACGACAAAACTGCAGCGCACTTATAATAATAAACGGAACGATATCTTCCGCTGGTGTGGACGCTAATATAGTTATCGTTCTTGGTGTGAACGAGCCTAGGGAGAAGGATCACAAAATGATGTGGATTTTATGTGGAAGCTTCTTGGAAAAATTTAAAACCTGCAAATGGAAAACATCATTAATCAAATGTAGGTCTGTTACTGTTAAAGAAACAGCACGCAAAAAATACAAATAGTAGAATTCTTCATTGCTGAAAGTGAACTTCTATGTCATTTTATACTGTCCTTTGACTGTCAGTTTCTCTGATTGCTTCAGATGGCCTCCAGCGAACCTCATACTTATCAATCTAATGAGGAACCCCAGCCTGGTGACCTCATCGAGATCTTCAGACCAGCCTATCAGCACTGGGCTCTTTACCTGGGAGATGGATACATCATCAACCTCACTCCTGTCGATGAGGGTCAAGCAGCCGCCATGTCCAGCGTGAAGTCTGTGTTCAGCCGGAAGGCCGTGGTGCGCATGCAGCTCTTAAAGGAGGTTGTGGGGGCAGATTCATTCAGGATCAACAATAAATATGATGATAATCACACGCCCCTGCCCGTCTCTGAGATCATTCAGCGGGCTCAGCTCCTCATTGGACAGGAGGTGTCATATGACCTGCTGGGCAGCAACTGTGAACACTTTGTCACTCTTCTTCGCTATGGGGAGGGAGTGTCTGAACAGGTTTCTCATTCTTTACCTCTGTGCACTAACCAAAAATACCACATTATTACCATGTTTCAGGAATTTGGCGTCACGGGCGATAGGTGCCATCAGTTTGGTGACTGCTGCAGCAAGTGCTTTCTCAGTGCTGGGACTCATCAACACACGCTCCAGAAACAGACCGTTCTAGATCTGCTGAAGCTCAGACCACATGAGACATTATATACATGGAGTGATCTGAATTATTATATCTGCTGACCTTTTCATTTGGATGGAAAGACTGTAGGCCATCTGACAAAACAGCTGTCAAAAGTTAAATGTCTTTGATATACTCAGCTTTTTAGGTTGAAAACAAGTTGTGTGACAATGCAATGAACCTTTGCTGTGACAACTTGATATGGTATTCATAGAAATGAAATAAA

Function

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495732 lncRNA downstream 7056 1625345 ~ 1626017 (-) True G431732
TU495764 lncRNA downstream 120803 1508586 ~ 1512270 (-) True G431764
TU495915 lncRNA downstream 129393 1503389 ~ 1503680 (-) True G431890
TU495760 lncRNA downstream 201507 1430802 ~ 1431566 (-) True G431760
TU495774 lncRNA downstream 202967 1429374 ~ 1430106 (-) True G431774
TU495737 lncRNA upstream 68576 1705349 ~ 1706071 (-) True G431737
TU495746 lncRNA upstream 90716 1727489 ~ 1732425 (-) True G431746
TU495757 lncRNA upstream 95972 1732745 ~ 1740620 (-) True G431757
TU495747 lncRNA upstream 116641 1753414 ~ 1754504 (-) True G431747
TU495938 lncRNA upstream 148812 1785585 ~ 1786256 (-) True G431913
CI01000306_01580628_01611787.mRNA mRNA downstream 21286 1580374 ~ 1611787 (-) True CI01000306_01580628_01611787
CI01000306_01572341_01576690.mRNA mRNA downstream 56383 1572341 ~ 1576690 (-) True CI01000306_01572341_01576690
CI01000306_01514599_01534002.mRNA mRNA downstream 99071 1514355 ~ 1534002 (-) True CI01000306_01514599_01534002
CI01000306_01502721_01504240.mRNA mRNA downstream 128833 1502666 ~ 1504240 (-) True CI01000306_01502721_01504240
CI01000306_01483485_01492511.mRNA mRNA downstream 140562 1482872 ~ 1492511 (-) True CI01000306_01483485_01492511
CI01000306_01665458_01676209.mRNA mRNA upstream 28024 1664797 ~ 1676223 (-) True CI01000306_01665458_01676209
CI01000306_01723684_01726043.mRNA mRNA upstream 86906 1723679 ~ 1726043 (-) False CI01000306_01723684_01726043
CI01000306_01756353_01763570.mRNA mRNA upstream 119402 1756175 ~ 1764246 (-) True CI01000306_01756353_01763570
CI01000306_01775235_01776152.mRNA mRNA upstream 138424 1775197 ~ 1776432 (-) True CI01000306_01775235_01776152
CI01000306_01792788_01804803.mRNA mRNA upstream 156015 1792788 ~ 1804803 (-) True CI01000306_01792788_01804803
TU495821 other downstream 320639 1311702 ~ 1312434 (-) False G431814
TU495679 other downstream 469735 1163027 ~ 1163338 (-) True G431706
TU495333 other downstream 1149424 448704 ~ 483649 (-) False G431428
TU495726 other upstream 81160 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 81160 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1363463 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 2905950 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU497685 other upstream 3724870 5361643 ~ 5383763 (-) True G433450

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU68988 True 1901 lncRNA 0.40 2 NC_047598.1 2019627 ~ 2039115 (+)
bowfin (Amia calva) TU68988 False 1348 lncRNA 0.49 2 CM030126.1 28385083 ~ 28387604 (-)