RNA id: CI01000306_01811531_01821737.mRNA



Basic Information


Item Value
RNA id CI01000306_01811531_01821737.mRNA
length 1611
RNA type mRNA
GC content 0.56
exon number 9
gene id CI01000306_01811531_01821737
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1811531 ~ 1821864 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTTCACACTAACACTCTGGAGATCAAAGGGACACGCGTGTCACTGGGCCACACCCCCTTAGACCAGCCCTCCCTGCTTATTGGCAGTCAGGACAGGGTCACGCCCACTTATCCAGCCCTCTCTGCTGATTGGCTGAAAGTAAGTTTTCATGAATCTCAGCTGGAGGGAAACCCCTTGTGGATTTACAGCCAGATCAGAACTGTCGAGATGATCAGAGTTCTGCTGGTTCTGCTGCTGCTGGGGTCCGTGGAGGGCAGGAGGGTTCGGGGTCAGCGGACTCAGAGCCGCCAGACGGACACGCCGGAGAGTTTTCCTCTGGATTTCACAGCTGTGGAGGGAAACATGGACAGTTTCATGACTCAGGTGAAAAACTTGGCTCAATCCCTCTATCCCTGCTCAACTCAGAAACTGGACCAGGAGATGAAGCTTCAGTTCTTGAGGAACTCGTCGGTCACCTGTAACGATGGCTCACCTGCTGGTTACTACATAAAGGAGTCCCGAGGCAGCCGGAGGTGGCTGATGTTCCTGGAGGGTGGATGGTACTGCTTCAGCAAACACACCTGCGACAGCAGATACGAGACCATGAGACGACTCATGAGCTCCAGTAAATGGCCTCCGACCAGGACAGATGATTACGCGTTCATGGGTTCTCAGATCATTCAGGAGGTCATAAAGGAGCTCGTGACTAAAGGACTCGACAGTGCTAAAGTCCTGCTGCTGGCCGGGAGCAGCGCCGGCGGGACAGGCGTCCTGTTGAACGTGGACCGTGTGTCGGAGCTGCTGAAGGATCTGGGTCACGGCTCTGTTCAGGTCCGTGGGCTGGCAGACTCAGGCTGGTTTCTGGATAATAAACAGTACCGCTGCAGTGACTGCATCGACACCATCAGCTGCGCGCCGACCGACGCCATCAAGAGAGGAGTCCGGTACTGGCGCAGTGTGGTTCCAGAGCGCTGCAGTGAAGCCCATGGTGGCGAGGACTGGAACTGCTTCTTCGGCTATAAGGTTCATCCAACACTGAAGATGCCGGTGTTTGTGGTTCAGTGGCTGTTCGACGAGGCTCAGCTGACAGTTGATAATGTCCATCTGACGGGTCAGCCGGTACAGGAGAGCCAGTGGCGATACATCCAGAACCTGGGCAGCGAACTCAGAAACACCCTCAAAAACGTCCCTTACTGGATGGACATCCACGTGAAAGGTACCTCGCTTCCACGAGCGCTCCAGTGCTGGGACCGCAGCCTCCGTAACCATGGCAACGGCAGCAGCGTTCAGGCTCCGCCCAGGGGCTGCCCCCTGCACTTGATTGACAGCTGTCCGTGGCCCCACTGCAACCCCACGTGCCCCACGATCAGAGAGCAGCTGACGGGGCAGGAGATGAGCGTCATCCAGTTCCTCACACACCTGGGCTTCGACGTGCAGCGCATGGCACAACAGCAGGGCATGGAGCCCAACAAACTACTGGGCATGCTCAGTAACGGCACCTGACACGGAGACCACACAAAGAGCCTCGTAAAGTGCAATGCATTTGACGACATACTCAAGTCCTACTCATGTTTTCTCAAAGGTCCGGCCCTGTTCGTGATCAGTTAGGGTGTGCTTTTCTATAGACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494413 lncRNA upstream 996 1810079 ~ 1810535 (+) True G430585
TU494382 lncRNA upstream 47045 1764254 ~ 1764486 (+) True G430569
TU493921 lncRNA upstream 97281 1712697 ~ 1714250 (+) True G430153
TU493850 lncRNA upstream 105459 1705371 ~ 1706072 (+) True G430082
TU493903 lncRNA upstream 185531 1625316 ~ 1626000 (+) True G430135
TU493913 lncRNA downstream 24199 1846063 ~ 1865533 (+) True G430145
TU494429 lncRNA downstream 56517 1878381 ~ 1883427 (+) True G430598
TU494436 lncRNA downstream 77001 1898865 ~ 1899107 (+) True G430603
TU494441 lncRNA downstream 81255 1903119 ~ 1904347 (+) True G430605
TU494430 lncRNA downstream 83613 1905477 ~ 1906644 (+) True G430599
CI01000306_01679537_01704400.mRNA mRNA upstream 106580 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
CI01000306_01639496_01661857.mRNA mRNA upstream 148383 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
CI01000306_01627469_01632656.mRNA mRNA upstream 178802 1627469 ~ 1632729 (+) True CI01000306_01627469_01632656
CI01000306_01578460_01578838.mRNA mRNA upstream 232504 1578460 ~ 1579027 (+) True CI01000306_01578460_01578838
CI01000306_01481595_01481955.mRNA mRNA upstream 329035 1481595 ~ 1482496 (+) True CI01000306_01481595_01481955
CI01000306_01854835_01855388.mRNA mRNA downstream 32971 1854835 ~ 1855560 (+) True CI01000306_01854835_01855388
CI01000306_01856805_01857982.mRNA mRNA downstream 34849 1856713 ~ 1858163 (+) True CI01000306_01856805_01857982
CI01000306_01871685_01875161.mRNA mRNA downstream 49706 1871570 ~ 1875301 (+) True CI01000306_01871685_01875161
CI01000306_01880262_01881242.mRNA mRNA downstream 58324 1880188 ~ 1881438 (+) True CI01000306_01880262_01881242
CI01000306_01885017_01886202.mRNA mRNA downstream 63054 1884918 ~ 1886594 (+) True CI01000306_01885017_01886202
TU493892 other upstream 592974 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 660593 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 811629 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1574162 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 326518 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1151292 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1952280 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1952319 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1956188 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile