RNA id: CI01000306_01871685_01875161.mRNA


Basic Information

Item Value
RNA id CI01000306_01871685_01875161.mRNA
length 849
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000306_01871685_01875161
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1871570 ~ 1875301 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAAAAAACCCATTACAGGACTTCTTGCTTTCACTTTCAGTTGTTGTGTCCTATATAAGGAGACTCCACCAAAGCCCTGCTGAGATTTTGTGAGAACTTGTGACACCCAAAAAATGTCAGACCGACAATTGAGCTACCATGAACATGAAGATGAAGAAGAATATGATAAAGAATGTGATGTTCCTCATACCAAACAGCCAAGTGAAGAAAACCCAAAAAATACAAGTGTGCAACTTGCATCACTTAATGCTGATGTAATCAAAACAAGTCTACGTATGATTGACACATTTAACAGACCAGGAGATGCCTATACAGAAAGCAAGTATGCTCGAGCTGGAACATATAAGATAGATCCTGAAAACCAACCAGGAATGAGGATTCCCAAGGCTGGAGCTTATGCAGAAGCAGGAGTTGGACGAGCTCGTGCTCAATACAAAGTATTCCAGGCTGAAGCCAAAGGTCCCAACGCCGCAGCTGGAGCTGAAGCCAGTCTGGGACTCGGAGCAATGGCTCGAGCTGAAGTTGTCAGCGCATCGGCTAAAGCCAGTCCAGTTGGTGTGAAATTGGGACTTGGAGTTGATACGGGTGCATCTATTGGTCTGGGTGGCATGGAGTTAAAAGTCTTGGGAACTGGAGTCTCAAATGGTCCAGAAATTGGTGTAGCTGTTCTGGGTAACGAAGTAAAAGTGTCATGTGCAATCATGTAGTCATACAGGTATTAATTACTTTTGAATATTTGTTATATGTGAAACCATGAAGACAAAAACCTGAATTTTTTAAAACTTTAACAATATAGTGACATGTTTTATTTTATAATTCTACAACTGTTGAGACTTTTCATTTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493913 lncRNA upstream 6037 1846063 ~ 1865533 (+) True G430145
TU494413 lncRNA upstream 61035 1810079 ~ 1810535 (+) True G430585
TU494382 lncRNA upstream 107084 1764254 ~ 1764486 (+) True G430569
TU493921 lncRNA upstream 157320 1712697 ~ 1714250 (+) True G430153
TU493850 lncRNA upstream 165498 1705371 ~ 1706072 (+) True G430082
TU494429 lncRNA downstream 3080 1878381 ~ 1883427 (+) True G430598
TU494436 lncRNA downstream 23564 1898865 ~ 1899107 (+) True G430603
TU494441 lncRNA downstream 27818 1903119 ~ 1904347 (+) True G430605
TU494430 lncRNA downstream 30176 1905477 ~ 1906644 (+) True G430599
TU494448 lncRNA downstream 60284 1935585 ~ 1989749 (+) True G430611
CI01000306_01856805_01857982.mRNA mRNA upstream 13407 1856713 ~ 1858163 (+) True CI01000306_01856805_01857982
CI01000306_01854835_01855388.mRNA mRNA upstream 16010 1854835 ~ 1855560 (+) True CI01000306_01854835_01855388
CI01000306_01811531_01821737.mRNA mRNA upstream 49706 1811531 ~ 1821864 (+) True CI01000306_01811531_01821737
CI01000306_01679537_01704400.mRNA mRNA upstream 166619 1679537 ~ 1704951 (+) True CI01000306_01679537_01704400
CI01000306_01639496_01661857.mRNA mRNA upstream 208422 1639065 ~ 1663148 (+) True CI01000306_01639496_01661857
CI01000306_01880262_01881242.mRNA mRNA downstream 4887 1880188 ~ 1881438 (+) True CI01000306_01880262_01881242
CI01000306_01885017_01886202.mRNA mRNA downstream 9617 1884918 ~ 1886594 (+) True CI01000306_01885017_01886202
CI01000306_01887307_01897613.mRNA mRNA downstream 11767 1887068 ~ 1897981 (+) True CI01000306_01887307_01897613
CI01000306_01907357_01910697.mRNA mRNA downstream 31970 1907271 ~ 1911561 (+) True CI01000306_01907357_01910697
CI01000306_02082508_02100892.mRNA mRNA downstream 207207 2082508 ~ 2100892 (+) True CI01000306_02082508_02100892
TU493892 other upstream 653013 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 720632 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 871668 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1634201 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 273081 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1097855 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1898843 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1898882 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1902751 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile