RNA id: TCONS_00019772


Basic Information

Item Value
RNA id TCONS_00019772
length 1742
RNA type mRNA
GC content 0.46
exon number 5
gene id XLOC_009907
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24681177 ~ 24695891 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCTCTGAGCAGCCATGGACAAGAGCGAGCTAGTGCAAAAAGCCAAGCTGGCCGAGCAGGCAGAGCGCTACGACGACATGGCAGCCGCTATGAAGGCTGTCACTGAGGGTGACATTGAACTGTCGAACGAGGAGCGCAACCTGCTCTCGGTGGCTTACAAGAACGTGGTGGGTGCCCGTCGCTCATCCTGGAGGGTCGTCTCCAGCATCGAGCAGAAGATGGAGGGTAGCGACAAAAAGCAGCAAATGGTCAAGGAATATCGGGAAAAGATCGAGAAGGAGCTGAAGGAGATCTGCAATGACGTACTGGTTCTTCTGGACAAGTATCTCATCCCCAAAGCGACCCCGGCTGAAAGCAGAGTCTTCTATCTGAAAATGAAAGGCGATTACTTTCGCTACTTAGCAGAGGTGGCTGTGGGAGAGGAGAAAAACTCTATCATTGGCAATTCGCAGGAGGCCTACAAGGATGCGTTTGAAATCAGTAAGGCAGAGATGCAGCCCACACACCCCATTCGTTTGGGTCTCGCTCTCAATTTCTCCGTATTCTACTACGAGATTCTCAACTCACCCGAACAGGCCTGCAAGCTCGCCAAAACAGCTTTTGATGAGGCCATTGCAGAGCTCGATTCACTGAATGAAGAATCCTACAAAGACAGCACATTGATCATGCAGCTACTGCGGGACAACTTGAcaCTGTGGACTTCAGATAACCAGGGCGAAGGCGAAGACGCCGAGGAAGGCCAAGAAAACTAAGTCTGGCTCTGTCCGTCCTTCCCCCTGTCATTCACCTGCCATCATTCCAGCTCACCATCAAACACTGAGACCACCTCATcatccacctctctctctctcttttagttCTTTTACTCTCGCGCCTTCCTTTGCTTTCTTCCTTCCCTGTCATTGTGGGTTTTTTTTCTAAGGATTTGTGTAACGGGAGGAGGGTGGGATGGGTTAATTAAGCGGGGTGGGTGGGCGCTCGAGATGCGTTGGGTCGGAACAAGGGACTGGGAGGGGATGAGGTTTTGTCTGCCTTGTTTTCTCCGTGGGTCGTTGCTTTAGCGTGGATGAATGCGGGTGAGGGCAAGTTCTCAGCTCATGCAAAGTTGCAAGTCAAACCCTTTTGTTATTCGTATACTGTATGTAAAACTCAGTTCAGGGGTCTGTGCGTTTGTCGTACAGCTGCAGTTTAGCGTCTGCATTAAATAAGCCCTTTTCTTCTAGTAGAAGTGAGGTTAGCAGTGCTAGTCTTTAGCTAGGAAAGAAGCAACTGTTTGCTCACGTCCTGTAAAATGATGggcaaaagaaaaaaaggttacattccatttattgtcattttcaaatTTCCAATTCCAGGAATTTGGTGCCCTGCAAGTGGCATTTATATTTTCCCCCCGTTAATCACGAGGTATGGAGGACCCAAGAACAAAGAGCACATAAGCTTGATGCTGTTACTGTATGACTGTACAAGCCGAGTAGTTGGATATActattgtaatttttgtttttccaggtatggtttgtttttattttcttatttttttttctccattgatTTCTTTTGATACTTGCCTAATTTGCATGTGGCTATGAAGTAGTTAATATGGGGAGGAAAGGGAGATTGTCGGGCCGGCTAGCTTTGTGTCATGTCTCTGGATTTTTTTCATACAGAACACCCAAGCATAAAtgttatttggagggaaaatatGTAATTTCATGTAAGtggattaaaaataatttaac

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004497 monooxygenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-448 Predicted to enable monooxygenase activity. Is expressed in head; nervous system; otic vesicle; post-vent region; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta).

Ensembl:

ensembl_id ENSDART00000183920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021714 lncRNA upstream 110306 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021715 lncRNA upstream 110306 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021933 lncRNA upstream 160031 24516092 ~ 24524076 (+) True XLOC_009904
TCONS_00021712 lncRNA upstream 476204 24198479 ~ 24207903 (+) False XLOC_009903
TCONS_00021716 lncRNA downstream 138888 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021934 lncRNA downstream 138904 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA downstream 200130 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021935 lncRNA downstream 380260 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021936 lncRNA downstream 511731 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00019768 mRNA upstream 38040 24626448 ~ 24646067 (+) False XLOC_009906
TCONS_00019769 mRNA upstream 38537 24632096 ~ 24645570 (+) True XLOC_009906
TCONS_00019764 mRNA upstream 689465 23984179 ~ 23994642 (+) False XLOC_009901
TCONS_00019765 mRNA upstream 692946 23984755 ~ 23991161 (+) False XLOC_009901
TCONS_00019762 mRNA upstream 703753 23979038 ~ 23980354 (+) False XLOC_009900
TCONS_00019773 mRNA downstream 25669 24721556 ~ 24733321 (+) False XLOC_009908
TCONS_00019774 mRNA downstream 26027 24721914 ~ 24732859 (+) True XLOC_009908
TCONS_00019775 mRNA downstream 37854 24733741 ~ 24741400 (+) True XLOC_009909
TCONS_00019776 mRNA downstream 146775 24842662 ~ 24873020 (+) False XLOC_009910
TCONS_00019781 mRNA downstream 275830 24971717 ~ 24974700 (+) False XLOC_009914
TCONS_00019767 other upstream 167015 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019751 other upstream 721178 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 829496 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019728 other upstream 1076755 23607231 ~ 23607352 (+) True XLOC_009889
TCONS_00019718 other upstream 1284947 23397801 ~ 23399160 (+) False XLOC_009882
TCONS_00019777 other downstream 185235 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019779 other downstream 202284 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019780 other downstream 209669 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019788 other downstream 399596 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019801 other downstream 569912 25265799 ~ 25271837 (+) True XLOC_009933

Expression Profile

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