RNA id: CI01000306_02109241_02110274.mRNA



Basic Information


Item Value
RNA id CI01000306_02109241_02110274.mRNA
length 1262
RNA type mRNA
GC content 0.38
exon number 5
gene id CI01000306_02109241_02110274
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2109126 ~ 2110875 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATAAACACTCACACACTCACACCATCCTCACACTAACAATCTGAGCCTCGTCCTCTGGACATTTATTTTCACTAAATACAGCAAACATCTTTTTCATCTGCACTTTTCAAAATGGGCGTCTTCTTCTCTCACATTTTCTCACGTCTCTTGAAGAAAAAAGAGATGAGGTTGCTTATGGTTGGTCTGGATGCAGCAGGGAAAACAACAATCCTCTACAAACTCAAACTTGGTGAAGTTGTCTCATCTATTCCAACTATTGGTTTTAATGTTGAGACAGTTGAATATAAAAACATCTCCTTCACGGTTTGGGATGTTGGTGGTCAGAGTGTCATCAGAGGCCTCTGGAGACATTACTATCAGAACACCAAGGGTCTGATCTTTGTGGTGGACACCAGTGATCATGACAGGATTGAAATGGCAGCAGAAGAACTAAATATGATGATGGCGGAGGATGAGATGAGAGACGTTGTTCTGTTAGTTCTCGCTAACAAGCAGGATTTACCCAAAGCCATGGCAGTCCACGAGCTGACAGAGAGACTGGGTTTACACGCACTGAGAGGAAGACAGTGGTTCGTTCAGCCCACATGTGCGGTTCAAGGGTCAGGGTTATATGAAGGACTGGACTGGCTCTCGGATCAACTGTCCAAACAACAATAAAGCAAAGTCGACATGAAACGGAAGTTGCAATAGTCTTTCTTCCCTATTGTGACGTATATCCGAGTGAAACGGCTTCTGGAACAAGAACAAACAGGACGCGGCTCGATTACTGGCGCCAGTAAACTCGTCATCAGAGAAGAGATGTCGCTGCAAGAGGAAGGAGAAGTTATTCTGATTAAAGGATAATTTAAGATAAATCATTTATAATAAATACTGCAATATTCCATAAACAACAAGAATTGTCCATTTTGATTTCATGGTCACTTTAATACTTTATTTTTGTGGACTGATACTTGAATACATGCTGTATATATTACGACAGCCTCCAACTGTTTATTATCTCAAAAGCATTTTGATTTATTAATGTTAAATTAAAACTGATATTTTAAATTGTTAGTCTTACTTTTGAAAAAAATTGTTATATAATTTTTTTTAAATTGTTGTTCTATTGACTTTGAAAGAGTTTGTCATGTTTCAGTATGTGTTCTGTTGTATTTGCACTTTGAAAGAACGACCTGATGTCTGCCTGTAATATTTATCTGTGCCTTTCAAATATCTCCAATACATGATGTATTTATTTACAATGTTTCACACTCATTTA

Function


GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494469 lncRNA upstream 79834 2003702 ~ 2029292 (+) True G430632
TU494448 lncRNA upstream 119377 1935585 ~ 1989749 (+) True G430611
TU494430 lncRNA upstream 202482 1905477 ~ 1906644 (+) True G430599
TU494441 lncRNA upstream 204779 1903119 ~ 1904347 (+) True G430605
TU494436 lncRNA upstream 210019 1898865 ~ 1899107 (+) True G430603
TU493869 lncRNA downstream 2730 2113605 ~ 2114102 (+) True CI01000306_02112910_02114040
TU494577 lncRNA downstream 48587 2159462 ~ 2192381 (+) True G430739
TU494585 lncRNA downstream 159902 2270777 ~ 2285286 (+) True G430745
TU494645 lncRNA downstream 241836 2352711 ~ 2352939 (+) True G430805
TU494651 lncRNA downstream 275409 2386284 ~ 2386558 (+) True G430811
CI01000306_02082508_02100892.mRNA mRNA upstream 8234 2082508 ~ 2100892 (+) True CI01000306_02082508_02100892
CI01000306_01907357_01910697.mRNA mRNA upstream 197565 1907271 ~ 1911561 (+) True CI01000306_01907357_01910697
CI01000306_01887307_01897613.mRNA mRNA upstream 211145 1887068 ~ 1897981 (+) True CI01000306_01887307_01897613
CI01000306_01885017_01886202.mRNA mRNA upstream 222532 1884918 ~ 1886594 (+) True CI01000306_01885017_01886202
CI01000306_01880262_01881242.mRNA mRNA upstream 227688 1880188 ~ 1881438 (+) True CI01000306_01880262_01881242
CI01000306_02112910_02114040.mRNA mRNA downstream 1940 2112815 ~ 2114420 (+) False CI01000306_02112910_02114040
CI01000306_02116775_02121990.mRNA mRNA downstream 5497 2116372 ~ 2122477 (+) True CI01000306_02116775_02121990
CI01000306_02140523_02142280.mRNA mRNA downstream 28620 2139495 ~ 2142301 (+) True CI01000306_02140523_02142280
CI01000306_02156224_02158555.mRNA mRNA downstream 45349 2156224 ~ 2158721 (+) True CI01000306_02156224_02158555
CI01000306_02160784_02174325.mRNA mRNA downstream 49909 2160784 ~ 2175204 (+) True CI01000306_02160784_02174325
TU493892 other upstream 890569 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 958188 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1109224 925544 ~ 999902 (+) True G430409
TU494062 other upstream 1871757 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494557 other downstream 37507 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 862281 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1663269 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1663308 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1667177 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910

Expression Profile