RNA id: CI01000306_02238316_02241601.mRNA



Basic Information


Item Value
RNA id CI01000306_02238316_02241601.mRNA
length 1543
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000306_02238316_02241601
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2238316 ~ 2242400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAAGCTCCTGGAAAACTCAAGTTTTGAGGCCATAAACAGTCTGCTCACTATTGAAACGGGAGACTGCAAGATAATTGGACGCATTGAGAGCTACTCCTGTAAGATGGCTGGTGATGACAAGCAGATGTTTAAGCAGTTTTGCCAGGAGGGGCAGCCGCACGTGCTGGAAGCTCTGTCTCCTCCACAGAGCTCTGGAATCAGCCCCAACAAACTGAGTCAGAGTTTGGATGATGGGGAGGGTCCTCTCTCAGATAAGTGCAGCAGAAAGACTCTCTTTTATTTGATCGCCACTCTCAATGAATCCTTCCGGCCAGACTATGACTTCAGTCGCACCAAAGGCCATGATTTCAGCAAGGAGCCCAGTGTTAATTGGGTGTTTAATGCAGTGAACAGCAGTTTGTCTGCCGCTGCGGGTGAGGCGTACAGTCACCTACAGCCTCAGTTATGGGAAGCCCTAGACAAGGAGATCAGCCTCGCTGAATGTGACATATACAGTTACAATCCTGACCTGGATTCAGACCCATATGGGGAAGAAGGCAACCTGTGGTCCTTCAACTACTTCTTTTATAACAAAAGACTGAAGAGGATTGTGTTCTTCACATGCCGTTCTGTCAGTCTTTTCATGGCTCCACGAGACTCTGGCATCGGCACAGAATTGGATCTGGAGTTGGATGAGGGCAGCTATGAGGAAGAGGAAGAGGGGAACATGGATGAAGAGAGGTATGGTGCACTGTGTGCCTGATGAAGCCCTCGTCCCTGTCCTCTGAAGCCAGCAATCTCTTGCCTGAGTTTTTATGCCTGTTAATCTTTTCTGTTTCTTATGTGTTCAATTTTATATTGTCGGTCATTGTTAGGAATGTTGTAAGGAGAGATGTTGTAATCCAGAGATTTACAAGTGCTATTCATTGCACTTTAACATTTACTTTGCATTGCATTCACTAGACTTACCTCTGACACTGGCCTTGGAGGGAACAAGCGTGACATGTTTTTACTGTCTTTTCTTTTTTATTTGTCTCTGAGAGTAAGTTGAATTATGCAGTTGTTTTACTTTCCCTCTCGTCCCCCCAAACCTCATTTATTTATTCATGTTCATTATTTCCACTAGTTTTTATGTCTCCATAAACGTCACAGTATTTCCACTAGGTGGCATATTTCAACATATCATCATCTTTGCCTCCTGTCTCTGCACTTCATTGGCATTTTGAGCAATGAAATGAGAAGATTGTACATCATAGTTCACATTTAAATGTTTAATTCCAGTTTCCATATTTGTTAGGCCTACACCATTTTTTTTTTTTTTTATTATATATATATATATATATATATATATATGAAGTTTTCCCTGTTCCCCCCCCCCTTCTTTTAATGATAATAGAACTACATAGATGAGTGTTTGTTTTTAGGCCTTAATACATTTTCCTGCAACTTTCTTGCCTCAGGAAAAATATATAAACAGAGAACAGCGTAAACGTTGCCCAGTAGATTTACTAATGCGTTGACCTACGGATCAACCTCCCTTTTTAGTTTTACCCCCAAAGCTA

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU494577 lncRNA upstream 45935 2159462 ~ 2192381 (+) True G430739
TU493869 lncRNA upstream 124214 2113605 ~ 2114102 (+) True CI01000306_02112910_02114040
TU494469 lncRNA upstream 209024 2003702 ~ 2029292 (+) True G430632
TU494448 lncRNA upstream 248567 1935585 ~ 1989749 (+) True G430611
TU494430 lncRNA upstream 331672 1905477 ~ 1906644 (+) True G430599
TU494585 lncRNA downstream 28377 2270777 ~ 2285286 (+) True G430745
TU494645 lncRNA downstream 110311 2352711 ~ 2352939 (+) True G430805
TU494651 lncRNA downstream 143884 2386284 ~ 2386558 (+) True G430811
TU494675 lncRNA downstream 239706 2482106 ~ 2483041 (+) True G430834
TU494775 lncRNA downstream 641491 2883891 ~ 3238771 (+) True G430931
CI01000306_02230144_02236022.mRNA mRNA upstream 1334 2230144 ~ 2236982 (+) True CI01000306_02230144_02236022
CI01000306_02204158_02222866.mRNA mRNA upstream 15450 2203927 ~ 2222866 (+) True CI01000306_02204158_02222866
CI01000306_02183898_02186529.mRNA mRNA upstream 51540 2183898 ~ 2186776 (+) True CI01000306_02183898_02186529
CI01000306_02177474_02180692.mRNA mRNA upstream 57476 2177406 ~ 2180840 (+) True CI01000306_02177474_02180692
CI01000306_02160784_02174325.mRNA mRNA upstream 63112 2160784 ~ 2175204 (+) True CI01000306_02160784_02174325
CI01000306_02263738_02279937.mRNA mRNA downstream 21218 2263618 ~ 2280012 (+) True CI01000306_02263738_02279937
CI01000306_02354432_02358965.mRNA mRNA downstream 110781 2353181 ~ 2359501 (+) True CI01000306_02354432_02358965
CI01000306_02359989_02366944.mRNA mRNA downstream 117589 2359989 ~ 2366997 (+) True CI01000306_02359989_02366944
CI01000306_02369579_02380912.mRNA mRNA downstream 127179 2369579 ~ 2381322 (+) True CI01000306_02369579_02380912
CI01000306_02389329_02392416.mRNA mRNA downstream 146929 2389329 ~ 2392960 (+) True CI01000306_02389329_02392416
TU494557 other upstream 87362 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1019759 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1087378 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1238414 925544 ~ 999902 (+) True G430409
TU494061 other upstream 2000947 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494533 other downstream 730756 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1531744 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1531783 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1535652 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 1535652 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910

Expression Profile


CI01000306_02238316_02241601.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

CI01000306_02238316_02241601.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000306_02238316_02241601.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006720 True 3361 mRNA 0.35 7 NC_007122.7 24046179 ~ 24056609 (+)