RNA id: CI01000306_02552479_02576156.mRNA



Basic Information


Item Value
RNA id CI01000306_02552479_02576156.mRNA
length 1014
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000306_02552479_02576156
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2552100 ~ 2576536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAATAAATGGAGAGGAGCGGTGGAAGGGAGGAGGAGCTCTCCTTTTCCCTATCCGATGTAAGAATGACAAGAGAAGGGAGGAACAAGGAGAGGGGAGTGGACAAAAACTGGCTTAGGGACAAAAATCTCCAAAAACCTGAACAGTAGCTGAGAGGAAGATCTAGACATAATGTGATGCAGCATTTTGGTTCCCTGAGCACCCGGGGTTACTACTGCTTCATTAAGTCCCCTTTCCCACACAACCATTCGCCCACATACATCCAAGAGTAGCAGAGAGGGACTTAGAAGTAGTTACATCTATTTTTGAAGTGCTACGATCACTGTTTGTCTCCATTCTAGATGCTAAAAGGACAAAACAGTTGGGATTTGGGCTCACAGAATGAGTGCTATCGCCACTGAGGACCAGGACATGTTCTGTGAGAAGGCAGTGGCCCTTATCGTTGACCTCTGCCTGGATGACAGCCCTCTCCTAGATTCGGAAACCTGTCAGGATTTCCTTGTGCTTCTGACCAACGGAAACCCCAACATCTCCAGCGCAGGTAGTCTGGAGCCTTCTGCATTGGCACTTGATCACACCGGAGGTGATAGTGTTAAAGCATTGTTGTCAGCTACATCTCCCAAAGCTGCAATGTAGGCAAATGAAAGATCTGGCTACAACAGCCTGCAGTGCATTGCTTATCATCCCTTAGTATTGCACTGACTCAGTGTCCCAACCTTTAGGTGATAATGACAGTGCTGTCAGTGCATTAGCTGTCCAAGATGGAAAGGCTTGTTATGGTACAAGTGGGAATGGGAAAAAAAAATATCCAAAATGTGCATTCAGGGCAGAACATCTCAGAAAGAAAGATGCAACTCGGCAGCGGTTGCCTTCAATGCGCTGTAGTGAGAGACACATGGGCTACAATCATTGCTTGATGATATTGTTAGTAATGGTATTAATATTTCATTTGTTTCCCAGTGACCTACATGAGATGTAATTATGATTTCATGAGACATCTTTTGATGTTGGTGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494675 lncRNA upstream 69059 2482106 ~ 2483041 (+) True G430834
TU494651 lncRNA upstream 165542 2386284 ~ 2386558 (+) True G430811
TU494645 lncRNA upstream 199161 2352711 ~ 2352939 (+) True G430805
TU494585 lncRNA upstream 266814 2270777 ~ 2285286 (+) True G430745
TU494577 lncRNA upstream 359719 2159462 ~ 2192381 (+) True G430739
TU494775 lncRNA downstream 307355 2883891 ~ 3238771 (+) True G430931
TU494528 lncRNA downstream 459532 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA downstream 473361 3049897 ~ 3050294 (+) True G430951
TU494561 lncRNA downstream 476476 3055130 ~ 3055694 (+) True G430723
TU494554 lncRNA downstream 522108 3098644 ~ 3099359 (+) True G430716
CI01000306_02398383_02404841.mRNA mRNA upstream 147197 2397867 ~ 2404903 (+) True CI01000306_02398383_02404841
CI01000306_02389329_02392416.mRNA mRNA upstream 159140 2389329 ~ 2392960 (+) True CI01000306_02389329_02392416
CI01000306_02369579_02380912.mRNA mRNA upstream 170778 2369579 ~ 2381322 (+) True CI01000306_02369579_02380912
CI01000306_02359989_02366944.mRNA mRNA upstream 185103 2359989 ~ 2366997 (+) True CI01000306_02359989_02366944
CI01000306_02354432_02358965.mRNA mRNA upstream 192599 2353181 ~ 2359501 (+) True CI01000306_02354432_02358965
CI01000306_02591160_02596388.mRNA mRNA downstream 14624 2591160 ~ 2597618 (+) True CI01000306_02591160_02596388
CI01000306_02614704_02617766.mRNA mRNA downstream 37996 2614532 ~ 2618085 (+) True CI01000306_02614704_02617766
CI01000306_02626856_02627986.mRNA mRNA downstream 50057 2626593 ~ 2628184 (+) True CI01000306_02626856_02627986
CI01000306_02643806_02653170.mRNA mRNA downstream 67270 2643806 ~ 2653422 (+) True CI01000306_02643806_02653170
CI01000306_02654091_02663519.mRNA mRNA downstream 77555 2654091 ~ 2663694 (+) True CI01000306_02654091_02663519
TU494557 other upstream 401146 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1333543 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1401162 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1552198 925544 ~ 999902 (+) True G430409
TU494061 other upstream 2314731 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494533 other downstream 396620 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 1197608 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 1197647 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 1201516 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 1201516 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910

Expression Profile