RNA id: CI01000306_02974291_02976718.mRNA



Basic Information


Item Value
RNA id CI01000306_02974291_02976718.mRNA
length 1513
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000306_02974291_02976718
representative False

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2973156 ~ 2979157 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAGAAGCAGGTATGTTTTACTTAACGTTACGCCTCGATTTTAGCTATGTGAGAAAATCTGTATATTCGCAAATTTTGTTTGTATGTATACAAATTTGTATGTATGCATACATGCTCGTACCATAATCATAATCTAGCCATATAACGCTGTTTATTGATTCGTGATGTTTACAGTATTTATATTTCTTCTACAGCATATTTTTAGTTAGTGTGTATTTGTAGCCCATTGCACAAAATGATAAATGATTTCCCCGTGTTTTCCTTTACATCACTAGCGAAAGAGAGCAAAACAATCACCATAAAAAACATCTACATACAGTTATTTGATAAATGCTGCCAAATGAACCCTGCGTTAAAAAACAAACATTGAAATTAAACCATTTCCACATGATGCAGATGCCGTGCTTTCTGAGAAAATGTAGGTATTGTTTTAATGGCACACCCCCCAGCTGGAGAACGACAGATGGACACCAACAATGGAGCTGGGGTCCAACAATGCACTCACAAAATTCAGTTCATCCATCTTTGTGGCCATATGAACAAAAATCCCCAGAAATGGGTCTTAAATAGCAGTCACATTTAGAAAATGTCTTTGTTGATAACTAAACTGATGAGTAAAACCACAGTGTTTACTGAATGTTTTGAATTTATAAGTATGCATGGATGGGGAAAGCCATTGTGTTAAGAAGTGCTTATTTCTTTTTCTTTTTTATTTCATCCCTACTTTATGCCAGGCCTGAAAAAAGATGCTCTGATTTCAGAATAAAGCCTGACCTCAATATGAGTTATGAGTTTAAAATAGCTCATAGCCTGATCCTGTCAGGTGTGGTTCCTAACCAAGCCTTGATTAGAGGATATAATTCAAAACAGAGACTATATCACAGTGTTTACATTTATAGTTGCCTTTTTTCTTTACCAAAGGTCATTCTGCTGAGATCTGAGTTCTGCCAGTGAGACTCGTACAATCACACGTAATTTATAACCATGTTTCAACGGCTCACAAACCTGCTCTTTGGAAGCGCGAGTGAAACAACTCAGGAACCAACTGTACCAAAACCAGGGTCTCTGGAAGTGGATGAAGAGGGCTGGCTTCTGGTCAATGCAGCTGATGGAGAGACATCCTCTGAACCCAGTGAGGTGCAGTTCAAGTTAATAAGAACCCTGTCAAGCACTGAGAAATGTGCTGCCAGCTCGGCCAGTGATGCAAGCACCGTAGAACCAGAAGTCCCTGTTGCTCGAGGCAGTGGTCGAGTATCTCAGCGGTTGGTCTCTCAGTCTGGGGCTCTGGTCAAAGTCACACAGGTGGGCCGGATACAGCGGGCTCAGGCTCGGGCCAACCGCCACAATCTCGGCCGCAAATGCATTCAGCGTCAGAACCACATACGTCAACGAGTTCCTCAACATTACTCTCGCAAACAGCGCGTGATCCTCCACCAGCCTGGCCGACGCAATTTTAGTCACTAAGATGCAGAGAGAGTCAACAAGCACATGCAAGTACCTTGGTTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494675 lncRNA upstream 490262 2482106 ~ 2483041 (+) True G430834
TU494651 lncRNA upstream 586745 2386284 ~ 2386558 (+) True G430811
TU494645 lncRNA upstream 620364 2352711 ~ 2352939 (+) True G430805
TU494585 lncRNA upstream 688017 2270777 ~ 2285286 (+) True G430745
TU494577 lncRNA upstream 780922 2159462 ~ 2192381 (+) True G430739
TU494528 lncRNA downstream 59305 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA downstream 73134 3049897 ~ 3050294 (+) True G430951
TU494561 lncRNA downstream 76249 3055130 ~ 3055694 (+) True G430723
TU494554 lncRNA downstream 121881 3098644 ~ 3099359 (+) True G430716
TU494841 lncRNA downstream 303968 3280731 ~ 3280990 (+) True G430987
CI01000306_02906259_02914960.mRNA mRNA upstream 56965 2906259 ~ 2916338 (+) True CI01000306_02906259_02914960
CI01000306_02898289_02901410.mRNA mRNA upstream 71819 2898289 ~ 2901484 (+) True CI01000306_02898289_02901410
CI01000306_02881627_02896122.mRNA mRNA upstream 76344 2881627 ~ 2896959 (+) True CI01000306_02881627_02896122
CI01000306_02835681_02847361.mRNA mRNA upstream 124046 2835681 ~ 2849257 (+) True CI01000306_02835681_02847361
CI01000306_02807061_02829421.mRNA mRNA upstream 143882 2807061 ~ 2829421 (+) True CI01000306_02807061_02829421
CI01000306_02983064_02988454.mRNA mRNA downstream 6110 2982873 ~ 2988581 (+) True CI01000306_02983064_02988454
CI01000306_02995035_03002605.mRNA mRNA downstream 18272 2995035 ~ 3002667 (+) True CI01000306_02995035_03002605
CI01000306_03018466_03023859.mRNA mRNA downstream 41371 3018134 ~ 3024091 (+) True CI01000306_03018466_03023859
CI01000306_03048314_03055936.mRNA mRNA downstream 71551 3048314 ~ 3056098 (+) False CI01000306_03048314_03055936
CI01000306_03062452_03066451.mRNA mRNA downstream 85689 3062452 ~ 3066656 (+) True CI01000306_03062452_03066451
TU494557 other upstream 822349 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1754746 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1822365 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1973401 925544 ~ 999902 (+) True G430409
TU494061 other upstream 2735934 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU495068 other downstream 797381 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 797420 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 801289 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 801289 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495134 other downstream 831470 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946

Expression Profile