RNA id: CI01000306_02995035_03002605.mRNA


Basic Information

Item Value
RNA id CI01000306_02995035_03002605.mRNA
length 2368
RNA type mRNA
GC content 0.45
exon number 20
gene id CI01000306_02995035_03002605
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2995035 ~ 3002667 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCTCACAAACACAAAGATAAATACAAGGACAAAGAACACAAACACAAGGACCACAAGAAAGACAAAGAACGTGAGAAATCAAAGTACAGCAACAGCGAACACAGGGACTCCTCGGATAAAAAGCACAGAGATAAAGATAAAGAGAGGCTGAAACTCAAAGATGGATCCTCAGACAAGCAGAAGGACAAACACAAAGAGAAGAAAAAGGAGGAAAGGTCCTTTGATGGCAAGCCCAAAAAAGAGAGAGAGAACGGATTTGCAAGCCCTTTTAAGTCTGAACCCGAGAATGATGACTTCTACCACTCTCCTAAACACGAGAAGTCTCTGAAGAGAGAACGCGATGATGACGATGTTGAGTTCAAGCCTAAAAAAATTAAAACTGAGGATGACAGAAGCGAAAAGAAGGCAAAGAAACGGAAACCGGAAGAAGAGGACGTAAAACCCAAAAAGAAGACAAAAGACAAGAAAGGAGAAGTTGCTACAGATGGCAAGAAAAAAGCAAAAAAGGAGCCAGAAGATAAGTGGAAATGGTGGGAGGAAGAGAGGTACACAGATGGTGTGAAATGGAAGTTTTTGGAACACAAGGGGCCTGTCTTTGCACCACCATATGAGCCTCTTCCCAGCAGCATCAAGTTCTATTATGATGGTACGTCTTATAACGAGACTATAGCAGTGCTTAAGTCTGTTAAAGGCAATGCGGGTTTCTCCACCCAAACTCAAATTTCTTTACTTTGGATATTGGCCATTATTTTCAGTAATTGGCTTTCTGGTAAACATATGAAACTCAGCCCTGAGGCAGAGGAGGTGGCCACTTTCTTTGCAAAAATGTTGGACCATGAGTACACCACCAAGGATATATTTCGGAAAAACTTCTTCAAAGATTGGAGGAAGGAAATGACGTCTGAAGAGAAATCCAAAATCACAGATCTGAATAAGTGTGACTTTTCTGAAATGAGCGAATATTTCAAAGCTCAATCTGAAGCCAGGAAGGCCATGACTAAAGAAGAGAAACAGGAGTATGGCTTCTGTGTCATGGACAATCACAAAGAGCGCATTGCCAACTTTCGTATTGAGCCTCCTGGCTTGTTCCGTGGCAGAGGTGACCATCCCAAAATGGGCATGCTGAAGCGTCGTATCCGACCTGAGGACATTATCGTTAACTGCAGCAAGGACTCAAAACATCCTAAACCACCTCCCGGGACGAAGTGGAAGGAGGTACGTCATGACAACAAGGTGACATGGCTGGTGTCCTGGACTGAGAATATCCAAGGCTCTATTAAATACATCATGCTGAACCCCAGTTCAAGGATCAAGGGAGAGAAGGATTGGCAAAAATATGAAACAGCCCGTCGGTTGAAAAAGTGTGTGGAGCGGATCCGTGCGCAATACCGCGAAGACTGGAAATCAAAAGAGATGAGGATCAGACAACGTGCTGTTGCTCTTTACTTCATTGACAAGCTGGCTCTGAGAGCAGGTAATGAAAAGGAAGAAGGAGAGACGGCTGACACAGTGGGCTGCTGCTCACTTAGAGTGGAACATCTAACTCTCCATCAAGAACTGGACGGCCAGGAGTTTGTCGTGGAGTTTGACTTCCTCGGTAAAGACTCCATTAGATACTACAACAAAGTCCCCGTTGAAAAGAGGGTTTTCAAAAATCTCCAGCTGTTCATGGAGGACAAGGAGCCGGAGGATGACCTCTTTGATCGTCTCAATACCTCCATTTTGAACAAGCATCTTCAGGAGTTGATGGATGGCCTTACGGCTAAAGTGTTCCGTACTTACAACGCCTCCATCACACTACAGCAACAGCTGAAAGAACTCACAAATTCTGAAGAAAACGTTCCTGCGAAGATCCTCTCCTACAATCGGGCTAACCGAGCAGTAGCCATCCTGTGTAACCACCAGAGGGCACCACCCAAGACATTTGAGAAGTCCATGCAAAATCTTCAGACAAAGATTGACGCAAAGAAGGAACAGCTTGCTGATGCTAAAAGAGAACTGAAAAGTGCCAAGGCTGACGCCAAAATACGCAGAGATGAGAAATCCAAGAAGGCCGTGGAGACCAAGAAGAAACTCGTGCAGAGGGTCGAGGAGCAGCTGATGAAGCTGGAGGTACAGGCCACCGACCGGGAGGAAAACAAGCAGATTGCCCTGGGTACCTCCAAGCTCAACTACCTGGACCCACGTATCTCAGTAGCTTGGTGCAAGAAGTTTGGCATCCCGATAGAAAAGATCTACAACAAAACTCAGCGTGAGAAATTTGCCTGGGCTATTGACATGGCTGATAAAGACTTTGAATTTTAAATCCTCTTTGTGATTTTTACTTTTCCCTCCACCCCATCCTTTTTTTTTTTTTTTTTCTTTAA

Function

GO:

id name namespace
GO:0016853 isomerase activity molecular_function

KEGG:

id description
K03163 TOP1; DNA topoisomerase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494675 lncRNA upstream 511994 2482106 ~ 2483041 (+) True G430834
TU494651 lncRNA upstream 608477 2386284 ~ 2386558 (+) True G430811
TU494645 lncRNA upstream 642096 2352711 ~ 2352939 (+) True G430805
TU494585 lncRNA upstream 709749 2270777 ~ 2285286 (+) True G430745
TU494577 lncRNA upstream 802654 2159462 ~ 2192381 (+) True G430739
TU494528 lncRNA downstream 33401 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA downstream 47230 3049897 ~ 3050294 (+) True G430951
TU494561 lncRNA downstream 50345 3055130 ~ 3055694 (+) True G430723
TU494554 lncRNA downstream 95977 3098644 ~ 3099359 (+) True G430716
TU494841 lncRNA downstream 278064 3280731 ~ 3280990 (+) True G430987
CI01000306_02983064_02988454.mRNA mRNA upstream 6454 2982873 ~ 2988581 (+) True CI01000306_02983064_02988454
CI01000306_02974291_02976718.mRNA mRNA upstream 18272 2973303 ~ 2976763 (+) False CI01000306_02974291_02976718
CI01000306_02906259_02914960.mRNA mRNA upstream 78697 2906259 ~ 2916338 (+) True CI01000306_02906259_02914960
CI01000306_02898289_02901410.mRNA mRNA upstream 93551 2898289 ~ 2901484 (+) True CI01000306_02898289_02901410
CI01000306_02881627_02896122.mRNA mRNA upstream 98076 2881627 ~ 2896959 (+) True CI01000306_02881627_02896122
CI01000306_03018466_03023859.mRNA mRNA downstream 15467 3018134 ~ 3024091 (+) True CI01000306_03018466_03023859
CI01000306_03048314_03055936.mRNA mRNA downstream 45647 3048314 ~ 3056098 (+) False CI01000306_03048314_03055936
CI01000306_03062452_03066451.mRNA mRNA downstream 59785 3062452 ~ 3066656 (+) True CI01000306_03062452_03066451
CI01000306_03081487_03082695.mRNA mRNA downstream 78168 3080835 ~ 3084309 (+) True CI01000306_03081487_03082695
CI01000306_03118178_03120842.mRNA mRNA downstream 115321 3117988 ~ 3120923 (+) True CI01000306_03118178_03120842
TU494533 other upstream 15878 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU494557 other upstream 844081 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1776478 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1844097 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 1995133 925544 ~ 999902 (+) True G430409
TU495068 other downstream 771477 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 771516 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 775385 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 775385 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495134 other downstream 805566 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006801 False 3795 mRNA 0.42 21 NC_007122.7 25296366 ~ 25311677 (+)