RNA id: CI01000306_03141095_03149372.mRNA


Basic Information

Item Value
RNA id CI01000306_03141095_03149372.mRNA
length 1484
RNA type mRNA
GC content 0.52
exon number 8
gene id CI01000306_03141095_03149372
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3141095 ~ 3149434 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGTTGAGTGTGATGGGGAGAGATGGGTCTCAATCAATCCAAAACAAGGAAATCCTCATGCGAGTAATGGCGATTCTTCCAGCAAACTCGCTTTACTTCTGCTAACGCCAACCAGCATAGCCATGTCATCCCGAGTGTTGCTACGGCAACAGCTGATGCGGGAGCAGGCGCAGGAACAGGAGAGAAGGGAGGCACAGCAGCAGGCGTCTGTCGCTCAGCTCCGCCCAACAGATTCCACTCCCGCCATCTCCGTCACGATGCCACCCATGGCTGCCCGCCCTCCTCCAGCTCAAGTACCGGTGGAGGTTCTGAAGGTGCAAACCCATCTTGAAAACCCAACTAAATACCACATCCAGCAGGCTCAGAGGCAGCAAGTGAAGCAGTACCTGTCCACCACGTTAGGCAATAAAGTTGCCACACAAACTCTTGGTGTATCCCCCGTTCCGCAGTCAAGCTCTGCTCCAGAGAGGGTCCCTTCTGCAAGCAGTGCTCCCAATAGCCCAATGGCACATCTTAACCTGGGCTCCAACAAAGAAGAGATGGATGATGTAATCGACGACATCATCAGCCTTGAGTCCAGCTTCAATGATGACATCATGTCCCTGATAGATTCTGGCCTACAACTCCCGAACACGCTACCAGGCACCCTTCTGGATGTCTACAGCAGTCCTGGCATGACGACCCCCACCATCACCGTCAGCAATTCCTGTCCAGCAGAACTGCCCAACATCAAAAGGGAATTTTCTGTTGAAAGGCGGAGAAGATTTAACATAAATGACAGAATAAAGGAATTAGGGGCTCTGATACCCAAATCCAGTGATCCGGAGATGCGTTGGAACAAGGGAACCATTTTGAAGGCTTCTGTTGATTATATAAGAAAACTTCAGAAAGAGCAACAGAGGGCCAAAGAGATTGAGATGAGGCAGAAGAAACTGGAACAATCCAACCAGGCCCTTCTGCTCCGCATACAGGAATTAGAGATGCAAGCTCGTCACCATGGCCTCAACACTGCTGTCTCTCCAGGCCTGGGCACAGACGCTTCCTTCCTTCAGCAACAGATACTACAAGCAAACCAGTCCATGCAGTCCGGCCCTGGGGAATGCCAACCTCCGAGTCACCTCAACATGGATGCTGCCATGGCACAGACTTCCCCCTCTCCCTTCCTCACAATACCTCCCTCCGTCTCCCCGGCTGCTGCGGCAGTAACCGGCCCTCTCGATCTGGATACGTTTAGCTTTGCGGAGCTGGACGACTCTACGGCCTCTGATCTTTACTCTGAAGTGGGTCTCAGTGACATTCTTATGGATGACGGCTGCACGATGCCCACCATCAGGTCTTCAGATGTGCTCTTTTCCCCGATGTCCCCCGGAGCTCCCAAGACCAGCAACGAGAGTAGTGTAAACATGGAGGATGACTTGTGACCGAACTGACCACTATATATATGTTTCTGTGCTTTTCCTCATGTGGGACGCCATGGAATGTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K09105 TFE3; transcription factor E3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494554 lncRNA upstream 41736 3098644 ~ 3099359 (+) True G430716
TU494561 lncRNA upstream 85025 3055130 ~ 3055694 (+) True G430723
TU494528 lncRNA upstream 86395 3036068 ~ 3054700 (+) True G430690
TU494805 lncRNA upstream 90801 3049897 ~ 3050294 (+) True G430951
TU494675 lncRNA upstream 658054 2482106 ~ 2483041 (+) True G430834
TU494841 lncRNA downstream 131297 3280731 ~ 3280990 (+) True G430987
TU494911 lncRNA downstream 210343 3359777 ~ 3370252 (+) True G431039
TU494985 lncRNA downstream 338089 3487523 ~ 3488001 (+) True G431107
TU495003 lncRNA downstream 368620 3518054 ~ 3518312 (+) True G431125
TU495007 lncRNA downstream 382460 3531894 ~ 3532107 (+) True G431129
CI01000306_03132695_03139713.mRNA mRNA upstream 1371 3132695 ~ 3139724 (+) True CI01000306_03132695_03139713
CI01000306_03123572_03128332.mRNA mRNA upstream 11370 3123434 ~ 3129725 (+) True CI01000306_03123572_03128332
CI01000306_03118178_03120842.mRNA mRNA upstream 20172 3117988 ~ 3120923 (+) True CI01000306_03118178_03120842
CI01000306_03081487_03082695.mRNA mRNA upstream 56786 3080835 ~ 3084309 (+) True CI01000306_03081487_03082695
CI01000306_03062452_03066451.mRNA mRNA upstream 74439 3062452 ~ 3066656 (+) True CI01000306_03062452_03066451
CI01000306_03163659_03168243.mRNA mRNA downstream 13839 3163273 ~ 3168338 (+) True CI01000306_03163659_03168243
CI01000306_03172031_03180084.mRNA mRNA downstream 22326 3171760 ~ 3180888 (+) True CI01000306_03172031_03180084
CI01000306_03196205_03203310.mRNA mRNA downstream 46771 3196205 ~ 3204162 (+) True CI01000306_03196205_03203310
CI01000306_03214469_03216852.mRNA mRNA downstream 65035 3214469 ~ 3216880 (+) True CI01000306_03214469_03216852
CI01000306_03219408_03238461.mRNA mRNA downstream 69974 3219408 ~ 3238474 (+) True CI01000306_03219408_03238461
TU494533 other upstream 161938 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU494557 other upstream 990141 2148382 ~ 2150954 (+) True G430719
TU493892 other upstream 1922538 1218095 ~ 1218557 (+) True G430124
TU494250 other upstream 1990157 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 2141193 925544 ~ 999902 (+) True G430409
TU495068 other downstream 624710 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 624749 3774183 ~ 3774262 (+) True G431188
TU495118 other downstream 628618 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other downstream 628618 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495134 other downstream 658799 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006820 False 1683 mRNA 0.50 9 NC_007122.7 25504215 ~ 25519837 (+)