RNA id: TCONS_00019780


Basic Information

Item Value
RNA id TCONS_00019780
length 1415
RNA type processed_transcript
GC content 0.43
exon number 8
gene id XLOC_009913
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24905556 ~ 24918957 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCAGAAATGTTTGTGTTTATTGCAAAACTGCTGATTTTCAGCTCAGTTATTACATCGGCTTTCACTTGCTATCAATGTTTCATTGATGAAAATGACAGTCGTCGTTTGTGTTTGGGTCATATTCTTACCGAATACAATGTAAGGAATGTAGACTCTTGTTACAAAACATTGGATCGCATATTCAACAATGAAGAGAAAGTCATAGAGGCTGGTAAAGTAGGGAGAGGATATGACTTGACGCTGAAGAATATTTTGATGGCTGAGATTATGCCTATAGTAGAGGAATTTGACCAGCAGCTAAATTACGATACAGAGTATGAGTCCAGGTTACAGGCAGCAGCAAACAATTTCATTGCAGCGGCCTCAAGCCTGCCCAGAGGATTCATCTTTACTGTTTAGGTTTCCAGGTGCAGGGTGCTGTTTATAACTGCGTGACCTGTCAGTATGACTCCTGTGAGTTCCCGCTGGACTGTCCCGGGAAGGAAATCACTGTACAAGAGAACAACAGGACTCAGATGTGGTGTAGCGTCCCTTTCCTGCTGCCTGCAGATGTAGAGATAGTCTGGAGATACGCACAGGACAGAACGATGCTGAGGGAGCGTTTTGATGATGTGACAGTTGGAGTAGATCCTTTATACTCCATTCCCTCTGCCCGTCCTGAGCAATCTGGAACCTACCAGTGTGAAGTGCTTTCTCAGGAGCAATCACTCGTCCGGCTTTACTTCTACCTCACAGTGGTTCCTGTGGCACAGACTTATCATGTCCACCTGCAGGATCTCTGTGCTCAGGCTCTTCGTCCAGAACCCCAGTTTCCTCCTTCGTTCAGCTTCTGGTTGCCCAGGCCTGCCCTCCTCATCACCTGCCTGACCGCAACCATGCTGCTGATTTTCCTCAGTCTGGGAGCGATGTGTCGGTTATGGTATCAGATTAGGACCAACGTTTCTAATCCAGCCTAAGAAACAATATTGACAGAAAAGAAGAAATACTTGATTCACTGCTAAACACAGTGTTTCAACAATAAATGCATTTCTAATTAAAACTGAATGGACTATTCAGAATTAATCTCTTCAAATACTATTAAACAGAAATGAGCTTTTGAAGACTTCTGGGAGAAAATGTAAGAGGCAGTGAATCTGAGCGCATGAATGCGACTTCACCACTACGTTCAGTTATAAAGGCTTCTTTATGCTACTAAATATAGCCAGACATGACTCAGGGCGTAACTCCTTTTACAGTTTTTACTCAGTGTTTTGATGCTGTTGTCCCAACAACCCATTAAGTCAAATCTGGGCGAGGAAAATGCTTTATTGTACAGAACTGCAATTTTCCATAATGTTTGTTAGGACAATGTGTATTTTAGAGCTACAAACTTTATTACAATGTCTGGATTTTATCACAGTGCTTAAGATTTAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000155083

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021934 lncRNA upstream 8445 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 8445 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 63244 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021714 lncRNA upstream 331755 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021935 lncRNA downstream 157190 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021936 lncRNA downstream 288661 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021937 lncRNA downstream 300478 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA downstream 300488 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA downstream 307897 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00019776 mRNA upstream 32536 24842662 ~ 24873020 (+) False XLOC_009910
TCONS_00019775 mRNA upstream 164156 24733741 ~ 24741400 (+) True XLOC_009909
TCONS_00019773 mRNA upstream 172235 24721556 ~ 24733321 (+) False XLOC_009908
TCONS_00019774 mRNA upstream 172697 24721914 ~ 24732859 (+) True XLOC_009908
TCONS_00019772 mRNA upstream 209669 24684107 ~ 24695887 (+) True XLOC_009907
TCONS_00019781 mRNA downstream 52760 24971717 ~ 24974700 (+) False XLOC_009914
TCONS_00019782 mRNA downstream 53869 24972826 ~ 24973944 (+) True XLOC_009914
TCONS_00019783 mRNA downstream 59246 24978203 ~ 24992830 (+) True XLOC_009915
TCONS_00019784 mRNA downstream 93037 25011994 ~ 25038855 (+) True XLOC_009916
TCONS_00019785 mRNA downstream 147923 25066880 ~ 25072830 (+) False XLOC_009917
TCONS_00019779 other upstream 7303 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 24338 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 388464 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019751 other upstream 942627 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019735 other upstream 1050945 23837920 ~ 23854611 (+) False XLOC_009892
TCONS_00019788 other downstream 176526 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019801 other downstream 346842 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 422459 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 422767 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1492689 26411646 ~ 26411778 (+) True XLOC_009956

Expression Profile

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