RNA id: CI01000306_04077126_04078242.mRNA



Basic Information


Item Value
RNA id CI01000306_04077126_04078242.mRNA
length 708
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000306_04077126_04078242
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4077126 ~ 4078531 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGGCGATTAAACGAAAAGTGGAGTTGGACTGGGGCACAGAAGACATGGAGTATCTACAGAAGGTGGAGCTCCATTCAGAAGGGGCGCTGAATGAAGTACGGCCTGACATTATCATATATAATGCAGGCACAGACATCCTTGATGGAGACCCTCTAGGAGGTCTGGCTATATCCCCGCAGGGTATCGTAAAGAGAGATGAGATCATCTTCAGGGCGGCCCGGCGGCGAGGAATACCCATCCTTATGGTGACATCAGGGGGATACCAGAAGAAGACCGCCCGCATCATCGCTGACTCCATCATGAATCTGCACAGACAGGGTTTGATTGGTGAAGAGGCTGTAGAGGGTGCGGGACCCTCACATGTGCCATTTATGATGACCAAATCTGTCTCATCAGGGGCCGTGTTGGCTGCCATTTAAATTCCTCTGATCTCTGGTCAAGTGTGTCAAACACGCTGTTAATTTACCTAATGCAAAAATTTAGAACTAATATATAATGTTCTGGGTGGTTTGGATCGAGATTGACTCAGGATAGTTTTCGTAGTTCATCGTTTTGAACTATTTAACTCGTATGTTGCATTTTTTGTGATAGTTTTAGAATTAAATTTTAAGATCGGGTAATATTTAAAATTTTTCCCTCATTTCTTAAGGGTGTTTTATGCAATGCTTGTTTGCACGTTCAATTTTTAAAGGAATAGTTTACTCAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU495263 lncRNA upstream 49080 4027722 ~ 4028046 (+) True G431368
TU495259 lncRNA upstream 60791 4015912 ~ 4016335 (+) True G431364
TU495229 lncRNA upstream 61368 4015485 ~ 4015758 (+) True G431334
TU495123 lncRNA upstream 271965 3804384 ~ 3805161 (+) True G431237
TU495124 lncRNA upstream 273485 3803250 ~ 3803641 (+) True G431238
TU495279 lncRNA downstream 20218 4098749 ~ 4099046 (+) True G431383
TU496667 lncRNA downstream 122113 4200644 ~ 4200874 (+) True G432537
TU496682 lncRNA downstream 143681 4222212 ~ 4226252 (+) True G432552
TU496738 lncRNA downstream 153393 4231924 ~ 4232162 (+) True G432592
TU496739 lncRNA downstream 153750 4232281 ~ 4233063 (+) True G432593
CI01000306_04050451_04054257.mRNA mRNA upstream 22724 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 187755 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_03827847_03828735.mRNA mRNA upstream 248281 3825737 ~ 3828845 (+) True CI01000306_03827847_03828735
CI01000306_03807268_03810946.mRNA mRNA upstream 265883 3807268 ~ 3811243 (+) False CI01000306_03807268_03810946
CI01000306_03778075_03781910.mRNA mRNA upstream 295084 3778075 ~ 3782042 (+) False CI01000306_03778075_03781910
CI01000306_04111278_04162816.mRNA mRNA downstream 32262 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04253810_04255748.mRNA mRNA downstream 174632 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04454619_04454783.mRNA mRNA downstream 376088 4454619 ~ 4455552 (+) True CI01000306_04454619_04454783
CI01000306_04489350_04503649.mRNA mRNA downstream 410819 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 491252 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
TU495134 other upstream 268128 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 294107 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 294107 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 299576 3774144 ~ 3774262 (+) True G431188
TU496727 other downstream 247871 4326402 ~ 4327822 (+) True G432583
TU496836 other downstream 443651 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 443679 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1580397 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1901982 5980513 ~ 5980671 (+) True G433126

Expression Profile