RNA id: CI01000306_04454619_04454783.mRNA



Basic Information


Item Value
RNA id CI01000306_04454619_04454783.mRNA
length 934
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000306_04454619_04454783
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4454619 ~ 4455552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCCGTCTCCGGGTTTGTTTGCTCCGCTTTGCGTTGTAACATCACATTAACGAGTCGCATTATAGGAATTTCTCATAAAGATGGGAGACTTCGCTCAACATGGCGTTGTTGCGGCTGCTTCCAGCAGTCCGGCTGGAAGAACGGCTCGATAAACGTCGGGTAAATTCGGAAATGCTCGGGTTCACCTTACGCCACACCGTAGCGATTGGAAGAACGACTCATTTTCGCGAATCGGTTCATTTGAACAGTTCGTTTCAAAGACGCCGTTCATAAAACGATTCAGGGATTATTTTTTACGTCGTGACGCAATTACGTCTTCACGCCTCCTGACAACGTTTGTTACCAACTGGAACTTTTTATGTAGGCCTATTTTTTCCCATTTACTTTAAACAAGACTAGACTTCAGTACATATCTTGAATGAAAAAAAAACAAAACAGTTCATTCATATTGTGTGTGTGTGTGTGTGTGTTGATAAAACTGTAAAACAATCAAGTCATAAACATACTTACAGTACATTTGTAATATTTCAGCTAGTCGGCTACTAAATTAACTTTTTGCCACATCAGTCAAATTCGAAATAGGTTGTTGGTTCAATTAGTTGGTCAGTTGTTGACTCCACAACCGCTCGAAACGATTCAGTTCAATTTGTGAACGACTCGTTCAGGCAAAATCTAAAAAGAACGATTCGTTTGCGAATCGGACATTGCAATACGCCAATGAGAGTGACGTCATAAAGGCAGTCGCCACTCGCCTGCACTGTTTAAAAAAGCTAGTTTATTGCAACTTTCTCTTTAACAGTCATTGTCAACTTTTTTTTTTTTCTTTTCTCTTCTCTTCCATATGTTCAGATGGCATTGGATGTATTGTTGATACATTCTGTGTAATGTATGCAAAGTTGTATTTCATTAATGTCATCTCTGAATTGTTTGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU496732 lncRNA upstream 34990 4418192 ~ 4419629 (+) True G432586
TU496703 lncRNA upstream 92388 4360581 ~ 4362231 (+) True G432568
TU496710 lncRNA upstream 106748 4345029 ~ 4347871 (+) True G432571
TU496776 lncRNA upstream 146926 4307346 ~ 4307693 (+) True G432629
TU496775 lncRNA upstream 147279 4307121 ~ 4307340 (+) True G432628
TU496688 lncRNA downstream 583 4456135 ~ 4506862 (+) True G432556
TU496825 lncRNA downstream 53887 4509439 ~ 4509709 (+) True G432672
TU496838 lncRNA downstream 74765 4530317 ~ 4530526 (+) True G432680
TU496858 lncRNA downstream 112058 4567610 ~ 4567836 (+) True G432697
TU496865 lncRNA downstream 125045 4580597 ~ 4586360 (+) True G432703
CI01000306_04253810_04255748.mRNA mRNA upstream 197778 4253163 ~ 4256841 (+) True CI01000306_04253810_04255748
CI01000306_04111278_04162816.mRNA mRNA upstream 290775 4110793 ~ 4163844 (+) True CI01000306_04111278_04162816
CI01000306_04077126_04078242.mRNA mRNA upstream 376088 4077126 ~ 4078531 (+) True CI01000306_04077126_04078242
CI01000306_04050451_04054257.mRNA mRNA upstream 400217 4050332 ~ 4054402 (+) True CI01000306_04050451_04054257
CI01000306_03889176_03889334.mRNA mRNA upstream 565248 3888348 ~ 3889371 (+) True CI01000306_03889176_03889334
CI01000306_04489350_04503649.mRNA mRNA downstream 33798 4489350 ~ 4505749 (+) True CI01000306_04489350_04503649
CI01000306_04570147_04574537.mRNA mRNA downstream 114231 4569783 ~ 4574728 (+) True CI01000306_04570147_04574537
CI01000306_04686121_04753101.mRNA mRNA downstream 230569 4686121 ~ 4753101 (+) True CI01000306_04686121_04753101
CI01000306_04789240_04793134.mRNA mRNA downstream 332618 4788170 ~ 4794154 (+) True CI01000306_04789240_04793134
CI01000306_04859604_04861501.mRNA mRNA downstream 403986 4859538 ~ 4861570 (+) True CI01000306_04859604_04861501
TU496727 other upstream 126797 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 645621 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU495118 other upstream 671600 3778052 ~ 3783019 (+) False CI01000306_03778075_03781910
TU495119 other upstream 671600 3778052 ~ 3783019 (+) True CI01000306_03778075_03781910
TU495068 other upstream 677069 3774144 ~ 3774262 (+) True G431188
TU496836 other downstream 66630 4522182 ~ 4522536 (+) False G432678
TU496834 other downstream 66658 4522210 ~ 4522536 (+) True G432678
TU497140 other downstream 1203376 5658928 ~ 5660169 (+) True G432958
TU497329 other downstream 1524961 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 1650591 6106983 ~ 6107080 (+) True G433684

Expression Profile