RNA id: CI01000306_05864099_05864974.mRNA


Basic Information

Item Value
RNA id CI01000306_05864099_05864974.mRNA
length 876
RNA type mRNA
GC content 0.47
exon number 1
gene id CI01000306_05864099_05864974
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5864099 ~ 5864974 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCACTTAGCAGTAATCTTATGTCTAGTGATCAGTATAGTCTGTTGTGCAGCGCTGGAACAGAGTCCGTCTGGGAAGAGCGGTTGGACTGGGAAGCTGTTAGTGGTACCAATGGATGGAAGTCACTGGACAGGAGTGAAGGCCGTGGCAGAAGAGATGGGACGCAGAGGTCACACAGTGATTGTGGTGATTCCAGAGATCAGCATGCGTTTGGGTCCAGGCAAACACTACATCACAAAGACGTTTCCGGTCCCATATGAGCTGGAGATGTTTAACGAGATATTGACCAAGCATGTTCGTGAATTGGCAGCACCAGATCAATCCCTACTGGAGAGTGCGACTTCAACGTTTAACAATATGAAGATGATGTTTAACTTGATGGCCTCTACAAGCGAAAGTCTGTTCAAGAACCAGGAGCTTATAGAGTTTCTGAGAGCGCAAAACTTTGATGCTGTTTTAACCGATCCTGCCCTACCAATGGGGGCCATATTGGCATATAATCTTTCCGTACCTGCGGTGTACATGTTAAGGGGAATACCATGTGGCATTGATGCTGCAGCCACAGCCTGTCCAGACCCTCTTTCATATGTCCCACGTTTCTTTACAAAAAACTCAGACCGGATGTCTTTTGGTCAGCGTGTGTGGAACGTTCTTGTGAGCATGCTGGAACCACTGGTGTGTAAGGTTTTTTATTTGTCCTATGAGGATGTGGCATACAACTTCCTGCAGAGAGATGTGAGTCTGATTGAGATCCTGAGCACTGCAGCTGTCTGGTTGATGCGGTATGATTTTAGCCTGGAGTTCCCCAAACCCCTGATGCCCAACATGCAGCTCATAGGAGGAATTAACTGTGAAATTAAGAACCCACTGACGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497164 lncRNA upstream 95033 5751669 ~ 5769066 (+) True G432982
TU497129 lncRNA upstream 190804 5664915 ~ 5673295 (+) True G432947
TU497253 lncRNA upstream 290026 5573601 ~ 5574073 (+) True G433070
TU497249 lncRNA upstream 298861 5565027 ~ 5565238 (+) True G433066
TU497248 lncRNA upstream 300427 5563418 ~ 5563672 (+) True G433065
TU497173 lncRNA downstream 20226 5885200 ~ 5887156 (+) True G432991
TU497320 lncRNA downstream 25987 5890961 ~ 5891184 (+) True G433120
TU497143 lncRNA downstream 26886 5891860 ~ 5892292 (+) True G432961
TU497324 lncRNA downstream 42313 5907287 ~ 5908200 (+) False G433123
TU497323 lncRNA downstream 42463 5907437 ~ 5909232 (+) True G433123
CI01000306_05857348_05858295.mRNA mRNA upstream 4685 5857348 ~ 5859414 (+) True CI01000306_05857348_05858295
CI01000306_05848803_05855772.mRNA mRNA upstream 8226 5848803 ~ 5855873 (+) True CI01000306_05848803_05855772
CI01000306_05835418_05846769.mRNA mRNA upstream 17140 5835418 ~ 5846959 (+) True CI01000306_05835418_05846769
CI01000306_05826877_05830536.mRNA mRNA upstream 33030 5826081 ~ 5831069 (+) True CI01000306_05826877_05830536
CI01000306_05805669_05822854.mRNA mRNA upstream 40691 5805669 ~ 5823408 (+) True CI01000306_05805669_05822854
CI01000306_05870047_05877183.mRNA mRNA downstream 4364 5869338 ~ 5877194 (+) True CI01000306_05870047_05877183
CI01000306_05976516_05985251.mRNA mRNA downstream 110848 5975822 ~ 5986261 (+) False CI01000306_05976516_05985251
CI01000306_06051975_06053165.mRNA mRNA downstream 186464 6051438 ~ 6054765 (+) True CI01000306_06051975_06053165
CI01000306_06055478_06066083.mRNA mRNA downstream 190504 6055478 ~ 6066413 (+) True CI01000306_06055478_06066083
CI01000306_06074861_06096200.mRNA mRNA downstream 209887 6074861 ~ 6096287 (+) True CI01000306_06074861_06096200
TU497140 other upstream 203930 5658928 ~ 5660169 (+) True G432958
TU496836 other upstream 1341563 4522182 ~ 4522536 (+) False G432678
TU496834 other upstream 1341563 4522210 ~ 4522536 (+) True G432678
TU496727 other upstream 1536277 4326402 ~ 4327822 (+) True G432583
TU495134 other upstream 2055101 3808233 ~ 3808998 (+) True CI01000306_03807268_03810946
TU497329 other downstream 115539 5980513 ~ 5980671 (+) True G433126
TU497968 other downstream 241169 6106983 ~ 6107080 (+) True G433684
TU498010 other downstream 243637 6108611 ~ 6129778 (+) True G433724
TU498892 other downstream 1254343 7119317 ~ 7119859 (+) True G434545
TU499876 other downstream 3360591 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504

Expression Profile