RNA id: CI01000306_05891607_05897232.mRNA



Basic Information


Item Value
RNA id CI01000306_05891607_05897232.mRNA
length 1096
RNA type mRNA
GC content 0.47
exon number 9
gene id CI01000306_05891607_05897232
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5891573 ~ 5897325 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACAGGAAGCTAGATCAGCACACCCGGAAGGTGACTTTTATTTTAAAACATTTCTAAAGACTCTTGCTTCACAGTCCGTCTCGACAGCGATATCATGGCTGTGTCCAGTGTTTTTAAAGTAGGTCTTTTCAATCACAAAGTTGCAATCGTGACGGGAGGCGGGACTGGGATAGGAAAAGCTATTACTTCTGAACTCTTACAGTTGGGATGCAATGTGGTCATATCATCCAGAAAGCTTGAGCGTCTGGAGTCAGCAGCTGAAGAGCTGACACAGAAAATCCCCCCATCCAGCCCGGCTAAAGTGACCCCTATACAGTGCAACATCCGGAATGAAGAAGAGGTGAAGAACCTGATGGCCTCCACCCTGAAGCTCCATGGGAGGATCGACTTTTTAGTGAATAATGGAGGTGGGCAGTTTTCCAGCCCAGCGAACATGATGAGTGTAAAAGGCTGGAATGCTGTGATTGACACCAACCTCAACGGAACGTTCTTATGCTGCAAAGAAGCATTCAATGCATGGATGAAAGATAATGGAGGTGTGATTGTGAACATCATTGCGGACATGTGGAAGGGTTTCCCTGGAATGGCACTTTTTTATGGCAGGCACACAGGAGCGGCCAGAGCTGCCGTGGACAACCTGACCAAGAGCCTGGCCATTGAGTGGGCTGATAGTGGGGTCCGGGTCAACTCTGTGGCGCCGGGAACTATCATATCCAAAACTGCAATGGAAAACTACAAAGAACATGGTCCTACTATGTTTAAGATGTCAGTGCCATTTAGTCCGGCTAAAAGACTTGGAATTCCTGAGGAGCTACATTACTGGAGCAACCTTGAAGGTCGACGCAGGACAGAGCCTGTACCACTCTGTGTGGCAAATCCCAGATCACAGTTCCTGGCCTGCAGCCCCCGAGGGAGAAAACACAGACACATTGAGAGAAATCATGAACATGACCAAATCCAAGCTGTGAATCATAACAAAACAAGTCTGACTGTCAAACAGCTGCTCTTTATCATAGCGTGGAAATATGTCACCATCCTTGAGGATTATGTTGACTTTTGTTAATTAAAGGGATCTTACAAAGTAAGACAGCAATAAA

Function


GO:

id name namespace
GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity molecular_function

KEGG:

id description
K07753 PECR; peroxisomal trans-2-enoyl-CoA reductase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU497907 lncRNA downstream 4441 5885203 ~ 5887132 (-) True G433628
TU497938 lncRNA downstream 39174 5849758 ~ 5852399 (-) True G433656
TU497862 lncRNA downstream 75704 5758198 ~ 5815869 (-) True G433595
TU497912 lncRNA upstream 114334 6011659 ~ 6028057 (-) True G433633
TU498234 lncRNA upstream 154480 6051805 ~ 6054634 (-) True G433940
TU498233 lncRNA upstream 206514 6103839 ~ 6107564 (-) True G433939
TU498244 lncRNA upstream 241352 6138677 ~ 6139696 (-) True G433948
TU498302 lncRNA upstream 359680 6257005 ~ 6257347 (-) True G434001
CI01000306_05888356_05890267.mRNA mRNA downstream 1207 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_05879886_05883498.mRNA mRNA downstream 7341 5878738 ~ 5884232 (-) True CI01000306_05879886_05883498
CI01000306_05760131_05782175.mRNA mRNA downstream 109398 5759334 ~ 5782175 (-) True CI01000306_05760131_05782175
CI01000306_05732360_05733779.mRNA mRNA downstream 155725 5731283 ~ 5735848 (-) True CI01000306_05732360_05733779
CI01000306_05664945_05673274.mRNA mRNA downstream 218275 5664945 ~ 5673298 (-) True CI01000306_05664945_05673274
CI01000306_05902120_05929983.mRNA mRNA upstream 4473 5901798 ~ 5929983 (-) True CI01000306_05902120_05929983
CI01000306_05990444_06033972.mRNA mRNA upstream 91928 5989253 ~ 6033972 (-) True CI01000306_05990444_06033972
CI01000306_06048083_06049632.mRNA mRNA upstream 150514 6047839 ~ 6049632 (-) True CI01000306_06048083_06049632
CI01000306_06108667_06110250.mRNA mRNA upstream 210933 6108258 ~ 6110250 (-) True CI01000306_06108667_06110250
CI01000306_06244021_06244397.mRNA mRNA upstream 346610 6243935 ~ 6244397 (-) True CI01000306_06244021_06244397
TU497685 other downstream 507810 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1346481 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 2887682 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 4142623 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 4143351 1747526 ~ 1748222 (-) False G431728
TU497952 other upstream 143689 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 298782 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 457855 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 540081 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 969331 6866656 ~ 6866936 (-) True G434338

Expression Profile