RNA id: CI01000306_05902120_05929983.mRNA


Basic Information

Item Value
RNA id CI01000306_05902120_05929983.mRNA
length 2600
RNA type mRNA
GC content 0.46
exon number 26
gene id CI01000306_05902120_05929983
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5901798 ~ 5929983 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTACTGGGCCACTAACAGAATCACAGATAGCATATGTAACAAGAGAAACCCTTCAGCTGATTTTGGCGTATCTGCACAGATCACAGCCACACTAGCTAAAAGAAAATCCTTCATTGGGACTCCTTATTGGATGGCCCCAGAAGTGGCCGCCGTGGAGAGGAAAGGAGGCTACAATCATCTGTGTGACATCTGGGCTGTGGGCATCACCGCTATTGAACTAGCCGAACTGCAACCTCCCATGTTTGACCTTCATCCAATGAGAGCTCTGTTTTTGATGACAAAAAGCAACTTTCAACCCCCCAAATTAAAAGACAAAGTTAAATGGACCAATAATTTCCACAATTTTGTGAAATTGGCGTTGACGAAAAACCCAAAGAAACGGCCACCAGCTGACAAGTTATTGCAGCATCCCTTTGTGTCCCAACCGTTGAGTCGTATTTTGGCGATTGAGCTGCTGGATAAAGCAAACAACCCCGACCACTCGTCCTTCACAGACCTGGATGATGACGACCCCGAGCCAGAGCCTCCAGTGTCTGTTCCACATCGGATTCGCTCAACAAGCCGTACCAGTCGGGAAGGGAAGACTCTGTCAGAGATTAACTTCGGTCAGGTGGAGTTTGACCCTCCTATAACAACAGAGACGAAACCGCATCATGAACCGTTACATCGTACTAGCTCTGTTCCAATACCTAATGAGCTGCCTACTGCTTACATAGGCAGCATTCTTCCCGACATTGACGATTTTTTGGACTGTGCCGAAGAAATATACTACACTGCAAGATCTAATCTGGGACGGTTAAACCAAAGTGCTCTGCAGGATTTACAGATGGATTATGGACAAGGATCTCCTAAAGGCTCCATCATGGGAGGAAATAAGAGCCTCTTGAAATCTGTTGAAGAGGAGCTGCACCAGAGCACGAAAAACTCTACCATGAGGCCTAAGGTCCCCCCACCACTTCCTCCCAAGCCAAAGCCTAGTCCCGGACCTCATCAAAGCCCCTCTGGTGATCATGACGGTAACCAGGGCACAATAAAGCGCTGCCCGGGACCTGAAAGCCCGGCTCGATCATCCACCAATGTACCCCCTCGGCCTCCGCCTCCTCGACTGCCTGCAAACAAGCTCAGCAGTTTAGGTAATGAGACCAGTCGGGAAGAACATGACCCGTGGGAAGTCCAGGGGGATGCTGGGATATGTAGTCAGTTCGACGAGAGGCTGCAGGTCTCGTTTGACAACGAGGAAGATCATAATGAGGAAGGAGACAGCAATGGAATTAGCCCATCTGAACATTCGCCCTCAACGGAGAGACAGTCCACAATGCCCCCTGCTGTTCCTATACCAAAGGACAAGAAAGATTTTCTAAAGCCCATCAGTAATGGTCTCCCTCCAACTCCAAAAGTTCATATGGGAGCATGTTTCTCTAAAGTCTTTAATGGCTGTCCATTAAAAATACACTGCGCTACCTCATGGATCAATCCAGACACACGAGACCAGTATCTGATATTTGGAGCAGAGGAAGGTATCTACACCTTAAACCTTAATGAGCTGCACGAGACGTCCATGGAGCAGCTTTTCCCCAGGAGATGTACTTGGCTGTATGTCATGAGCAACAGCCTGCTATCAATATCCGGAAAAGCATGTCATCTTTACTCTCACAGTCTGACTGGCCTGTTTGAACATGCTCGACAAATGCAGAAACTCCCTGTTGCCATACCAACACATAGATTTCCTGACAAAATGATCCCCAGGAAATTCTCAGTGTCCAATAAGATCCCTGAAACAAAAGGGTGTCAGAAGTGCTGTGTAGTGAGGAATCCTTATACTGGTCACAAGTACCTGTGTGGTGCCTTTCAGTCCAGTGTTGTCCTTTTTGAGTGGGTGGAGTCCATGCAGAAATTCATGTTGGTCAAGAGCATAGACTTCCCCCTGCCGTGTCCGCTGGAGGTGTTTGAGATGCTGGTGGTTCCAGAGCATCAGTATCCTCTCATCTGCATAGCTGTGAGCAAAGGGACGGAGCTTAATCAGGTGGTGCGGTTTGAGACACTCAATCCCAACTCTACCTCCAACTGGTTCGACTCTGATACCCCACAGAGTTGTGTGATGCATGTGACCCAGCTGGAGAGAGATACAATTTTAGTCTGCTTGGATCGGTGCATTAAGATTGTGAATTTGCAAGGTCGGTTAAAGTCCAGTCGAAAACTCTCAGCAGAACTGACTTTTAACTTCCAGATTGAATCAATAGGTATGGGACCTTGGTACATTAAGGGTGGCCTGAAGTAAATGTTCCTCCATTTTAACATAACTCCTCTCTAAGCTCACTGAATTTAACAGTTACACTTTAGGTATATTTAAACACACTTTTCTATGGGATTTTTTGTAGTATTTTGTACAAAGAATGCATTTAAATCTGTGTTTTAATAACTCTTTCTCTCTCTCTCTATGCATCTATCTGTCCCTCTTAGTTTGCCTTCAAGACAGTGTGTTGGCCTTCTGGAGACATGGCATGCAAGGACGTAGCTTCAAGTCCAATGAGGCAAGTCTAAGTTTTTTTTATATGTGAGAGAAAATGTACAGACGGCCTGTCAATAATATCAAGAAAAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04406 MAP4K3, GLK; mitogen-activated protein kinase kinase kinase kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU497907 lncRNA downstream 14666 5885203 ~ 5887132 (-) True G433628
TU497938 lncRNA downstream 49399 5849758 ~ 5852399 (-) True G433656
TU497862 lncRNA downstream 85929 5758198 ~ 5815869 (-) True G433595
TU497912 lncRNA upstream 81676 6011659 ~ 6028057 (-) True G433633
TU498234 lncRNA upstream 121822 6051805 ~ 6054634 (-) True G433940
TU498233 lncRNA upstream 173856 6103839 ~ 6107564 (-) True G433939
TU498244 lncRNA upstream 208694 6138677 ~ 6139696 (-) True G433948
TU498302 lncRNA upstream 327022 6257005 ~ 6257347 (-) True G434001
CI01000306_05891607_05897232.mRNA mRNA downstream 4473 5891573 ~ 5897325 (-) True CI01000306_05891607_05897232
CI01000306_05888356_05890267.mRNA mRNA downstream 11432 5888069 ~ 5890366 (-) True CI01000306_05888356_05890267
CI01000306_05879886_05883498.mRNA mRNA downstream 17566 5878738 ~ 5884232 (-) True CI01000306_05879886_05883498
CI01000306_05760131_05782175.mRNA mRNA downstream 119623 5759334 ~ 5782175 (-) True CI01000306_05760131_05782175
CI01000306_05732360_05733779.mRNA mRNA downstream 165950 5731283 ~ 5735848 (-) True CI01000306_05732360_05733779
CI01000306_05990444_06033972.mRNA mRNA upstream 59270 5989253 ~ 6033972 (-) True CI01000306_05990444_06033972
CI01000306_06048083_06049632.mRNA mRNA upstream 117856 6047839 ~ 6049632 (-) True CI01000306_06048083_06049632
CI01000306_06108667_06110250.mRNA mRNA upstream 178275 6108258 ~ 6110250 (-) True CI01000306_06108667_06110250
CI01000306_06244021_06244397.mRNA mRNA upstream 313952 6243935 ~ 6244397 (-) True CI01000306_06244021_06244397
CI01000306_06253870_06254391.mRNA mRNA upstream 323363 6253346 ~ 6256066 (-) True CI01000306_06253870_06254391
TU497685 other downstream 518035 5361643 ~ 5383763 (-) True G433450
TU497393 other downstream 1356706 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034
TU496065 other downstream 2897907 3000236 ~ 3003891 (-) True G432022
TU495727 other downstream 4152848 1748822 ~ 1748950 (-) True G431728
TU495726 other downstream 4153576 1747526 ~ 1748222 (-) False G431728
TU497952 other upstream 111031 6041014 ~ 6041283 (-) True G433670
TU498286 other upstream 266124 6196107 ~ 6197210 (-) True G433985
TU498319 other upstream 425197 6355180 ~ 6361643 (-) True G434016
TU498395 other upstream 507423 6437406 ~ 6452251 (-) True G434086
TU498677 other upstream 936673 6866656 ~ 6866936 (-) True G434338

Expression Profile