RNA id: TCONS_00019788


Basic Information

Item Value
RNA id TCONS_00019788
length 682
RNA type processed_transcript
GC content 0.50
exon number 2
gene id XLOC_009919
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25095483 ~ 25104993 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTCCTGCGACCATTTGGGCTGTGTGTACATTTAGGATTTTAACAGGTTAGCTTTGCGCCTGTTCACTTTAAATCGTGTTTATGTCGTGTTATAAACTAACTGAACATGTACCACAGTCATTCGATGTGGCTGTGGATTAATTTTTCGAGAATATACGTTAGTCGTTATGCGGACACGTCGCATTTATGACTTTAACGCGAACAGCCGTACGTTAGCTGCTCGAGAAGAGCGAGTGGTGGCTAACGTAATTTATGCGGAATGCGCATCCATTGCGGATGTGGTGCAGAATAAATGCGCATTGCTGCGACACAGTCATTAAAATGAGGCGATGAATGCCTTGCCATGGAACAGCATGGTGGCTTTTCACCCTTCTTGTGAATGGCACGCTGTCCAGCCGTCACGTCGGTGTGTCTGTAAAGCACTACATATCCATGACTGAGTACTACGAGGAGGGGGGCTTGCTGTACGAGCACTCACCTCCCATGCACATCAAAGTGGAGTCTCCAGAGGGTCCCTTTGGAGGCGGGGTGTCCGAGGACGGTTTCCCCAGAGAAGATGACGACTCTGAGGCCAGCTGTGACCATCAGAACGGCGGGTTGCCAAGCAGCCTGCCCTTTAATGTGGTGGTCGTGCACCCCAACATAGTCGCTCCTGGCATGTCTTCGGATGATCTCATCCC

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-179 Predicted to act upstream of or within apoptotic process. Predicted to be active in nucleus. Orthologous to human MYPOP (Myb related transcription factor, partner of profilin).

Ensembl:

ensembl_id ENSDART00000157346

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021935 lncRNA upstream 16453 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021934 lncRNA upstream 198372 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 198372 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 253171 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021714 lncRNA upstream 521682 24565734 ~ 24573801 (+) False XLOC_009905
TCONS_00021936 lncRNA downstream 111056 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021937 lncRNA downstream 122873 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA downstream 122883 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA downstream 130292 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00021717 lncRNA downstream 137391 25233953 ~ 25235093 (+) True XLOC_009931
TCONS_00019787 mRNA upstream 15007 25074029 ~ 25080476 (+) False XLOC_009918
TCONS_00019785 mRNA upstream 22653 25066880 ~ 25072830 (+) False XLOC_009917
TCONS_00019786 mRNA upstream 23107 25068576 ~ 25072376 (+) True XLOC_009917
TCONS_00019784 mRNA upstream 56628 25011994 ~ 25038855 (+) True XLOC_009916
TCONS_00019783 mRNA upstream 102653 24978203 ~ 24992830 (+) True XLOC_009915
TCONS_00019790 mRNA downstream 10782 25107344 ~ 25115472 (+) True XLOC_009920
TCONS_00019791 mRNA downstream 20265 25116827 ~ 25124951 (+) True XLOC_009921
TCONS_00019792 mRNA downstream 30373 25126935 ~ 25130075 (+) True XLOC_009922
TCONS_00019793 mRNA downstream 36773 25133335 ~ 25135212 (+) True XLOC_009923
TCONS_00019794 mRNA downstream 40921 25137483 ~ 25163213 (+) True XLOC_009924
TCONS_00019780 other upstream 176526 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 197230 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 214265 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 578391 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019751 other upstream 1132554 23960871 ~ 23962929 (+) False XLOC_009898
TCONS_00019801 other downstream 169237 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 244854 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 245162 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1315084 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1359648 26456210 ~ 26457614 (+) False XLOC_009958

Expression Profile

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