RNA id: TCONS_00019796


Basic Information

Item Value
RNA id TCONS_00019796
length 3216
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_009926
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25171832 ~ 25181542 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCACCTTCTGCATGCAACCTGATTTGTGCTTTATTACTTTGTGTcgttataaaatagtttttgcCGTTGACGGTAATTTCAGTTACGCTTTGAGCAGTTGGTGATATTTTCAAAGCCGATCATGGCAGTTAAGGAATGACTATAAGTTAGCAGGCAGTATCAAAGGTCCATTGTTGCATTGCTGAACAGCAGTGTTTGCAAATGCTCGTCGAAGACAACTAGGGCACCATGTCAGAGTTTACCCTCGATATCCAGCTGACAGAGTTGGGTTTTTCAAACTGGAATTTTCCCCTCTGTGAGCCACCAAGTGTTAAGGAGACATTTTTGCCAGCTCAGAGCACCACAGAAAAACCAACAACTGCAGACTGTCATGAAGATCCCTGCTTCGTTCCAAATGCCTTGACAGAAAAAAGCTTTCTACAGGACCATCAATATTTCTGTCCCTTCAAACCAAACTCTCCCATCAGCGTAGAAACAGCTCAGAGTGATTCAAATATCGTTAGCACCGAAAAGAAGAACAAAGCTATTTGCAACTCATGGAATAAAGCAAGAAAAAGAGAGCGTGCAGGTCGAAGAAACAGTGATGACTCTCAAGATGGAGAAGAGGAAATGGAAAAAGATGAAGAGGAGCAGACATGTGCAGAGGGGACGCTAGAAACCTCCAGTCCTACCATGGAGGAAGTTGTGTCTGGTGAGGAAGGGACagatgaaaatgaagtggaataTGTTTTGACTGATGATGATGGGGATTATGTTGATGAAGATGAAGAGGTGGAAGATGAtattgaggaggaggaggaggagaaggaggaacAAGATGAGGATGTTTCCTGGTCAGAGTCGAACGAAAATGGAGAAAACAAAGACAATCTCTGCCATGTGTGTGATCTCACCTTCTCCTCTCTCTTCTTGCTCCGAGAACATTTGAACATGCATACGGGTGTTCGGCCCTACCGCTGCGACGAATGCAGCAAGCAGTTCTGCCAGTTAGTCAATTACCGCACACACCTTCGCTCCCACTCGCAAAAGGCCTCCATCCACTGCCGCGTTTGCTCAAATACCTTCGAGACCGAGGAGCAGCTTCAACACCACTTGGACACTAACCACTTTGAGAAAGAGTTCTACCAGTGTGATTTTTGCAAGCAGATTTTCACTGACCTTGAATTGTGCAAGGATCATGTAGAGGCGCATAGGCAACAGGCCAAGCGGCATTTGTGTCTCAAATGTGGCTCCAGTTTTCGCCATCGCAACTCTCTCCTACTTCACCTTGAGTGGCACAGCAGAGGCTTTTTCTCCTGCCCGGACTGTGAGCGAACGTTCTCCAGCAAGACTTCTTTATTACGCCACAGTTTCTCTCATTTGGGCGTCTTGCCGTACACGTGCCTGAAGTGCAAACGTCATTTCCGTTTGCCCTCGCTCTACCACAGCCATGAGTGTAAGCCCGAGAGCATCCAGTGTATGGCGTGTTTGGTTTTCTTTCAGAGTCAGGAGGATTTTGACAAGCATAAGAAGGAAACTGGATGCTGGGGTCATCAAGGGTCTTTGCAGACCAAGACTGATGAAATCCGTTGCATGGAGTGTGGAAAAGTGTTTGCGAGCGTCGAGGAGCTGAAGAAGCACGGGAGCACACACCAGCGGGTCCTGAAATGTGCCGAATGCGGGATGGGTTTCCGTTCTGCGCTCATGCTTATGTCACATATGGGAGGTCATGCGGCACAGCGGCCGTGCCTCTGCCAGGACTGTGGCCTGGGCTTTCCCCATCAGCAGGGTTTTGACAGCCACCTGAAAACTTGTGGATTGGAGGCACCACCGGTGGTTACTGTGAAGAAGCCAAAACTGAAAGCAAGCCCCACAACAAAACCAGTTGCTCAAAGCATAATCTTTCAAACTATCGCTCAGCCCTCAAATCCTGCAATGTTCTCTAGTGGCTTGAAGAATGTGCAGATACTTCCAGTAGGTGATCAGAACAGGACTGCTGATGGCAAATGGAGTCTGACCTTAAATGAAAAGCCTTCTCCAGGAACGCCTTTAGTGATGCTTCTGCCGGTCCCCACCTCAGATTCTACCAAGAGCTCACAAACATTCCTACCTTCATCATTAATCTTAGAAACCCCTTCAACCACTTCAAATATCATTCCCCTTCCGATGGCCCCATTCAGCAGCGTCATTACTAAAGAAGAGCCCAacattccttcaaacacactcattccTGTGGAAAGCCTCGACAGTACCTCAAAGAAGAGATGGACCATTGTTGAAGGTCAAGGTTCTGTTCATGGTTTTGATATGGAAAACTCAAAGGCAGGTGAACAGACTACAGTTGTGATTCAGGATGAAAGAATGATTGTTGCTACACAAGTAATGGAGAATGAGCAAAAAATTCAATCAAACATGAAATCTAATGTATCAAGGGATGAAAAAACAAATCCAGGAGGTTTGTCAGATGCTGCTGAACCTGCAAACGCAGTGACCCCATTGTGTCAAGGGCAAACACTGGATTCTTTACAAACAGACTCTCTCGTTTCTGCTTCGTCAGAAATGACTCCTCACAAAAGTAAAGACGAGCAGTGTTTAGAAGAAGACAAGTCATCTAACAGGACATGCACAGAGACAGAATTTACCTTGATGGAGGACAAGGCAGAAGATGGTCCACAGGGTCAAAACGAGTCTGGCTTTGACGTGGAGGTGGAGATTCGGGAAGATGTGGATTCCAGTAATACGGAAGTGGAGATCGGCGATGAAGACAGCGGAGTGGACATGTTGGACGGTGAGCTTCATGAATGTGTGACTTGTGGACAAGTTCTTCCAGAGAAGGACATGGTCCAGCACTACATGAAGCATGCTGCGGTCAATGACGGTCCTGAGCCCTCGCCTGTTAACAGTAGCACACACACTACACAACGCAGCCCTCCACACAGCCCGCTTAGAAAAAGACTGCGGTCTGGCACAGTGCTGTGACGTTAGTTCACAAATGTttagatgattttttttattattatattaaattgattTGACTTGATAAATATTACACCATCTTTAcatgatttattttctttgggAAACGGGTGTCACAATTATTTTTCCCGGATGGTGAAAAGTTTGGTGAATGTTAAAACCAAGTCTCTTTTGAATGTATTCTGGTTtgctttcacagtatttcattgCATTTCCACTATGATGTGCAGGATACAATAAATCTAGATTAGGAAGTGG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4873 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF214 (zinc finger protein 214) and ZNF784 (zinc finger protein 784).

Ensembl:

ensembl_id ENSDART00000156416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021935 lncRNA upstream 92802 25076147 ~ 25079030 (+) True XLOC_009918
TCONS_00021934 lncRNA upstream 274721 24834791 ~ 24897111 (+) False XLOC_009910
TCONS_00019778 lncRNA upstream 274721 24896017 ~ 24897111 (+) True XLOC_009910
TCONS_00021716 lncRNA upstream 329520 24834775 ~ 24842312 (+) False XLOC_009910
TCONS_00021715 lncRNA upstream 598031 24572141 ~ 24573801 (+) True XLOC_009905
TCONS_00021936 lncRNA downstream 26076 25207618 ~ 25213978 (+) True XLOC_009929
TCONS_00021937 lncRNA downstream 37893 25219435 ~ 25242310 (+) False XLOC_009930
TCONS_00021938 lncRNA downstream 37903 25219445 ~ 25242310 (+) False XLOC_009930
TCONS_00021939 lncRNA downstream 45312 25226854 ~ 25242310 (+) True XLOC_009930
TCONS_00021717 lncRNA downstream 52411 25233953 ~ 25235093 (+) True XLOC_009931
TCONS_00019795 mRNA upstream 1987 25163443 ~ 25169845 (+) True XLOC_009925
TCONS_00019794 mRNA upstream 8619 25137483 ~ 25163213 (+) True XLOC_009924
TCONS_00019793 mRNA upstream 36620 25133335 ~ 25135212 (+) True XLOC_009923
TCONS_00019792 mRNA upstream 41757 25126935 ~ 25130075 (+) True XLOC_009922
TCONS_00019791 mRNA upstream 46881 25116827 ~ 25124951 (+) True XLOC_009921
TCONS_00019797 mRNA downstream 2665 25184207 ~ 25187809 (+) True XLOC_009927
TCONS_00019798 mRNA downstream 15030 25196572 ~ 25200757 (+) True XLOC_009928
TCONS_00019799 mRNA downstream 64315 25245857 ~ 25250414 (+) True XLOC_009932
TCONS_00019800 mRNA downstream 77771 25259313 ~ 25272633 (+) False XLOC_009933
TCONS_00019802 mRNA downstream 104456 25285998 ~ 25295185 (+) True XLOC_009934
TCONS_00019788 other upstream 75270 25095483 ~ 25096562 (+) False XLOC_009919
TCONS_00019780 other upstream 252875 24905556 ~ 24918957 (+) True XLOC_009913
TCONS_00019779 other upstream 273579 24898171 ~ 24898253 (+) True XLOC_009912
TCONS_00019777 other upstream 290614 24881122 ~ 24881218 (+) True XLOC_009911
TCONS_00019767 other upstream 654740 24516092 ~ 24517092 (+) False XLOC_009904
TCONS_00019801 other downstream 84257 25265799 ~ 25271837 (+) True XLOC_009933
TCONS_00019805 other downstream 159874 25341416 ~ 25341543 (+) True XLOC_009937
TCONS_00019806 other downstream 160182 25341724 ~ 25341811 (+) True XLOC_009938
TCONS_00019823 other downstream 1230104 26411646 ~ 26411778 (+) True XLOC_009956
TCONS_00019829 other downstream 1274668 26456210 ~ 26457614 (+) False XLOC_009958

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_05740951_05748956.mRNA True 2802 mRNA 0.47 3 CI01000027 5740951 ~ 5748956 (+)