RNA id: TU500062


Basic Information

Item Value
RNA id TU500062
length 36
RNA type TUCP
GC content 0.50
exon number 1
gene id G435631
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9860213 ~ 9860582 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACCCTGCCAGGTTCAGTCGCGCGGACTAATGTTTATAAAGCAAACACCAGGCTCAGACTGAGATATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGGTTTGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU500034 lncRNA upstream 111651 9745834 ~ 9748829 (+) True G435609
TU500013 lncRNA upstream 142866 9704707 ~ 9717614 (+) False G435590
TU500011 lncRNA upstream 162155 9697429 ~ 9698325 (+) True G435589
TU499959 lncRNA upstream 257084 9602427 ~ 9603396 (+) True G435540
TU499973 lncRNA upstream 380387 9436545 ~ 9480093 (+) True G435554
TU500067 lncRNA downstream 957 9864146 ~ 9865724 (+) True CI01000306_09860935_09865155
TU500072 lncRNA downstream 14451 9877640 ~ 9877881 (+) True G435637
TU500077 lncRNA downstream 15475 9878664 ~ 9884919 (+) False G435639
TU500099 lncRNA downstream 33805 9896994 ~ 9897394 (+) True G435660
TU500100 lncRNA downstream 34671 9897860 ~ 9898223 (+) True G435661
CI01000306_09851578_09857742.mRNA mRNA upstream 1928 9851227 ~ 9858552 (+) True CI01000306_09851578_09857742
CI01000306_09674684_09680504.mRNA mRNA upstream 179807 9672775 ~ 9680673 (+) True CI01000306_09674684_09680504
CI01000306_09656951_09671072.mRNA mRNA upstream 188714 9655395 ~ 9671766 (+) True CI01000306_09656951_09671072
CI01000306_09625036_09626067.mRNA mRNA upstream 233539 9624960 ~ 9626941 (+) True CI01000306_09625036_09626067
CI01000306_09559074_09602026.mRNA mRNA upstream 258234 9558978 ~ 9602246 (+) True CI01000306_09559074_09602026
CI01000306_09866302_09875270.mRNA mRNA downstream 3113 9866302 ~ 9875717 (+) True CI01000306_09866302_09875270
CI01000306_09891658_09893015.mRNA mRNA downstream 28469 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_09922070_09935786.mRNA mRNA downstream 58881 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09971328_09977478.mRNA mRNA downstream 108139 9971328 ~ 9977752 (+) True CI01000306_09971328_09977478
CI01000306_10078014_10104625.mRNA mRNA downstream 214367 10077556 ~ 10105147 (+) True CI01000306_10078014_10104625
TU500012 other upstream 123336 9712849 ~ 9737144 (+) True G435590
TU499849 other upstream 575151 9273899 ~ 9281923 (+) False G435449
TU499848 other upstream 582651 9273899 ~ 9277829 (+) False G435449
TU499876 other upstream 633974 9225565 ~ 9226506 (+) False CI01000306_09225597_09230504
TU498892 other upstream 2740621 7119317 ~ 7119859 (+) True G434545
TU500075 other downstream 16731 9879920 ~ 9884919 (+) True G435639
TU500080 other downstream 28343 9891990 ~ 9892016 (+) True G435641
TU501503 other downstream 1219799 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 1219799 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1406569 11269758 ~ 11271160 (+) True G437030

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007078 False 1979 mRNA 0.43 10 NC_007122.7 37638980 ~ 37650966 (+)