RNA id: CI01000306_09971328_09977478.mRNA



Basic Information


Item Value
RNA id CI01000306_09971328_09977478.mRNA
length 1252
RNA type mRNA
GC content 0.46
exon number 7
gene id CI01000306_09971328_09977478
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9971328 ~ 9977752 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCGGTGATGTAATGCTCATTCCTCACCTGGAAAAACAGGTCGAAACCTGCTCAGAAAATCCACAGTCTGTAGGGACAATAATCAAACTTGTTCATGCATCAGCAGCAGCACAAGAAACGTCCTCTTTCAGTCATGTGATCTTAAACAATTTGATTCCAAAGATCTTGACTCACCTGCACAGATGGTTATTTGATCATGTTTACAGTGTGTTATGGCTTATTCTTAGGGCCCAGTGCACCTGCACAGAGCTGAATATGAACAGAACCGAAATACTAGTTGAACCATGTGGGTCCGGATTTCCCGCCCTCCATGATGATGCCCTCATGAGAAGAGAAGAAGGCCTGCAGAGGTCAGTAGAGGGTCGGGCAGCATCAGATGAGGAAGAGGAGGAGAGAGGCTTGGATGAAGGACAGTGCTGCCACCTGGAGGTCAAACGGCTGATTAACAGATTACACAGCTGTGCTAAAGGGTGTCAGAAAGTTGCTATCTGTAACTGGCTTGTCTCTCAGAGCTCCGCTCACAGCAAAGAAACTAAAGGACGTGTATGGATTCCTCAAGTAGAGGAGAGGGGAAATGAAGGAGTAAAGATGAAGCAGAAAGAGGTGGACAGCTTGAGAGCTCATCATTCACTGCTGGAGGAGAGACTGACTGATGCGCTCACTTTACTGCTGCAGATACCACATAAAAGAGTCTCTCGCCGGATCTTGGGGAAAATACTGATCAACACACTAGATCTGTGTACCAGAAAAAGTCACGACTGCACTCCAGTGTTCCAGGTCGTGGACACGCTCTGCCAGCAGCTCCTTTCCAGTGACCTCCTGGATGGAGGAGAAGAGGTCAGCATTGGGTCACGACCTTCTGTGACCTCAGTAAGCCTCGGCCTCATTCTACCCTGTCTGGTCTTTATCCGTGTCAATCCTTATTATTCCTGTACCGATCTGCCTGAGCCGCTCTCATGCTGGAAACAGATCTGCTGAGTTATGCGTCTGGATGATTTGCTGAAGTCTTCCTCTGTATTATGAATGATAAGGATGGAACACTGTCTCCAGAAACTCTGATAGACGAGGAGCTGCTAACATTGTGATTCACGGTAGAAAATTACAAATGCAAGGTCACTGGGATTGACGTCAGCTGGGACATTTTAGACGTTCACTTATCAGACATTTATCATCTGAAAATATGTATCACGTTTTCGACATTGATAATGAGAAATGTTTTTTAAACACTAAATCATATTTACAATACTGTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU500103 lncRNA upstream 66215 9904858 ~ 9905113 (+) True G435664
TU500102 lncRNA upstream 66741 9903949 ~ 9904587 (+) True G435663
TU500100 lncRNA upstream 73105 9897860 ~ 9898223 (+) True G435661
TU500099 lncRNA upstream 73934 9896994 ~ 9897394 (+) True G435660
TU500077 lncRNA upstream 86409 9878664 ~ 9884919 (+) False G435639
TU500117 lncRNA downstream 35783 10013535 ~ 10013776 (+) True G435678
TU500120 lncRNA downstream 44576 10022328 ~ 10025387 (+) False G435681
TU500121 lncRNA downstream 44576 10022328 ~ 10023416 (+) True G435681
TU500142 lncRNA downstream 75125 10052877 ~ 10053204 (+) True G435701
TU500143 lncRNA downstream 75962 10053714 ~ 10130880 (+) True G435702
CI01000306_09922070_09935786.mRNA mRNA upstream 34921 9922070 ~ 9936407 (+) True CI01000306_09922070_09935786
CI01000306_09891658_09893015.mRNA mRNA upstream 78172 9891658 ~ 9893156 (+) False CI01000306_09891658_09893015
CI01000306_09866302_09875270.mRNA mRNA upstream 95611 9866302 ~ 9875717 (+) True CI01000306_09866302_09875270
CI01000306_09860935_09865155.mRNA mRNA upstream 106074 9860935 ~ 9865254 (+) False CI01000306_09860935_09865155
CI01000306_09851578_09857742.mRNA mRNA upstream 112776 9851227 ~ 9858552 (+) True CI01000306_09851578_09857742
CI01000306_10078014_10104625.mRNA mRNA downstream 99804 10077556 ~ 10105147 (+) True CI01000306_10078014_10104625
CI01000306_10109047_10115899.mRNA mRNA downstream 129883 10107635 ~ 10116072 (+) True CI01000306_10109047_10115899
CI01000306_10190981_10191175.mRNA mRNA downstream 213229 10190981 ~ 10191195 (+) True CI01000306_10190981_10191175
CI01000306_10194611_10226157.mRNA mRNA downstream 216486 10194238 ~ 10226166 (+) True CI01000306_10194611_10226157
CI01000306_10241081_10252745.mRNA mRNA downstream 263329 10241081 ~ 10252864 (+) True CI01000306_10241081_10252745
TU500080 other upstream 78089 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 86409 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 108139 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 1105236 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 1105236 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 1292006 11269758 ~ 11271160 (+) True G437030

Expression Profile