RNA id: TU501552


Basic Information

Item Value
RNA id TU501552
length 74
lncRNA type sense_over
GC content 0.37
exon number 1
gene id G436975
representative False

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10737326 ~ 10737522 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATCAGTGACGCCAAACTTGCTAAACCAAACTAGCCTCATCTTTGTTGAATTGTTTTCGTTAGAAATCATAAGATTGTGTCCATCCGTTTTTAAAATGGAGCCAGCATGTCGAAAAGACAAACAGAAACAGCAAACACCGACCCGTGGAGACAGAACGAAACAGAAATCAGCCCAGCAGGAGCTGAAGCAGAGACAGAGAGCAGAGATTTACGCCCTGAACAAAGTCATGACTGAACTTGAACAGCAGCAGTTCGAGGCCTTCTGCAAGCAGATGCAGTCACAAGCAGAATGAGAGAAACTCATGTCAGGGCAAACATTCACAGGTTAGGGTTACATTACGATGTTACTACTCATATTTTTGTATTATTGTAAACCATATGATAATCACTTCTTTCAGCCCCCGTCATTTAAACCTAAATGCACCCGCTGGAGAATGCATGGCTGTATTGGTGCACAAACACAGTACTTGAATCTGAGTGTACAATCACATCGCAAACATTGGGTAGTATGTACAAAACCAAAAATATCATAATTTTTATCAGAGAACCACCCTGTGAAAAGACATTCACTTACTCTGTAGGATGTTAAACATCTGTTCAGTTTCATTTTCATTGTTAATTGTAATGTTTTATATGACATGCAATGTTTATTGTCCGGAACGAGTATTACATTATATATGATTGTACAAATCTATTTTTTGACAATTTGCAACCTCTTGACTGAACTGAAAATAAGATACAGTTGTCTCTCTTTTAGTTTATCATTAATTTATTTGTGACATACGATAATAATGGTTTATGTTCCTTTTACCACAAGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501550 lncRNA upstream 6957 10730128 ~ 10730492 (+) True G436973
TU501483 lncRNA upstream 59843 10677365 ~ 10677606 (+) True G436913
TU500353 lncRNA upstream 130290 10606864 ~ 10607159 (+) True G435889
TU500342 lncRNA upstream 210240 10512750 ~ 10527209 (+) True G435878
TU500216 lncRNA upstream 450957 10283638 ~ 10286492 (+) True G435767
TU501558 lncRNA downstream 2055 10741924 ~ 10744824 (+) True G436976
TU501561 lncRNA downstream 23779 10763648 ~ 10763995 (+) True G436978
TU501522 lncRNA downstream 35191 10775060 ~ 10802813 (+) True G436949
TU501523 lncRNA downstream 67195 10807064 ~ 10826963 (+) True CI01000306_10775550_10815981
TU501531 lncRNA downstream 141238 10881107 ~ 10901365 (+) True G436958
CI01000306_10564069_10568262.mRNA mRNA upstream 168892 10562840 ~ 10568557 (+) True CI01000306_10564069_10568262
CI01000306_10548464_10549530.mRNA mRNA upstream 187822 10548464 ~ 10549627 (+) True CI01000306_10548464_10549530
CI01000306_10429251_10466444.mRNA mRNA upstream 270598 10429251 ~ 10466851 (+) True CI01000306_10429251_10466444
CI01000306_10347562_10355420.mRNA mRNA upstream 381992 10346351 ~ 10355457 (+) True CI01000306_10347562_10355420
CI01000306_10332743_10335743.mRNA mRNA upstream 401600 10332661 ~ 10335849 (+) True CI01000306_10332743_10335743
CI01000306_10751001_10756733.mRNA mRNA downstream 10741 10750610 ~ 10756775 (+) True CI01000306_10751001_10756733
CI01000306_10775550_10815981.mRNA mRNA downstream 35477 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_10975455_10976511.mRNA mRNA downstream 235458 10975327 ~ 10977095 (+) False CI01000306_10975455_10976511
CI01000306_11052174_11076357.mRNA mRNA downstream 312305 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_11107383_11122980.mRNA mRNA downstream 367430 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
TU500080 other upstream 844210 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 852530 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 874260 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 343119 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 343119 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 529889 11269758 ~ 11271160 (+) True G437030

Expression Profile