Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU501555 |
| length | 74 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G436975 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 10737326 ~ 10737522 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU501550 | lncRNA | upstream | 6957 | 10730128 ~ 10730492 (+) | True | G436973 |
| TU501483 | lncRNA | upstream | 59843 | 10677365 ~ 10677606 (+) | True | G436913 |
| TU500353 | lncRNA | upstream | 130290 | 10606864 ~ 10607159 (+) | True | G435889 |
| TU500342 | lncRNA | upstream | 210240 | 10512750 ~ 10527209 (+) | True | G435878 |
| TU500216 | lncRNA | upstream | 450957 | 10283638 ~ 10286492 (+) | True | G435767 |
| TU501558 | lncRNA | downstream | 2055 | 10741924 ~ 10744824 (+) | True | G436976 |
| TU501561 | lncRNA | downstream | 23779 | 10763648 ~ 10763995 (+) | True | G436978 |
| TU501522 | lncRNA | downstream | 35191 | 10775060 ~ 10802813 (+) | True | G436949 |
| TU501523 | lncRNA | downstream | 67195 | 10807064 ~ 10826963 (+) | True | CI01000306_10775550_10815981 |
| TU501531 | lncRNA | downstream | 141238 | 10881107 ~ 10901365 (+) | True | G436958 |
| CI01000306_10564069_10568262.mRNA | mRNA | upstream | 168892 | 10562840 ~ 10568557 (+) | True | CI01000306_10564069_10568262 |
| CI01000306_10548464_10549530.mRNA | mRNA | upstream | 187822 | 10548464 ~ 10549627 (+) | True | CI01000306_10548464_10549530 |
| CI01000306_10429251_10466444.mRNA | mRNA | upstream | 270598 | 10429251 ~ 10466851 (+) | True | CI01000306_10429251_10466444 |
| CI01000306_10347562_10355420.mRNA | mRNA | upstream | 381992 | 10346351 ~ 10355457 (+) | True | CI01000306_10347562_10355420 |
| CI01000306_10332743_10335743.mRNA | mRNA | upstream | 401600 | 10332661 ~ 10335849 (+) | True | CI01000306_10332743_10335743 |
| CI01000306_10751001_10756733.mRNA | mRNA | downstream | 10741 | 10750610 ~ 10756775 (+) | True | CI01000306_10751001_10756733 |
| CI01000306_10775550_10815981.mRNA | mRNA | downstream | 35477 | 10775346 ~ 10816076 (+) | False | CI01000306_10775550_10815981 |
| CI01000306_10975455_10976511.mRNA | mRNA | downstream | 235458 | 10975327 ~ 10977095 (+) | False | CI01000306_10975455_10976511 |
| CI01000306_11052174_11076357.mRNA | mRNA | downstream | 312305 | 11052174 ~ 11076496 (+) | True | CI01000306_11052174_11076357 |
| CI01000306_11107383_11122980.mRNA | mRNA | downstream | 367430 | 11107299 ~ 11123375 (+) | True | CI01000306_11107383_11122980 |
| TU500080 | other | upstream | 844210 | 9891990 ~ 9892016 (+) | True | G435641 |
| TU500075 | other | upstream | 852530 | 9879920 ~ 9884919 (+) | True | G435639 |
| TU500059 | other | upstream | 874260 | 9860480 ~ 9863189 (+) | False | CI01000306_09860935_09865155 |
| TU501503 | other | downstream | 343119 | 11082988 ~ 11098033 (+) | False | G436932 |
| TU501504 | other | downstream | 343119 | 11082988 ~ 11098376 (+) | True | G436932 |
| TU501617 | other | downstream | 529889 | 11269758 ~ 11271160 (+) | True | G437030 |
