RNA id: CI01000306_10975455_10976511.mRNA


Basic Information

Item Value
RNA id CI01000306_10975455_10976511.mRNA
length 985
RNA type mRNA
GC content 0.46
exon number 3
gene id CI01000306_10975455_10976511
representative False

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10971973 ~ 10978046 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATGGGAATGGACGGGCCACATAAAGGGCCTCAATGTGATATTAATCCTGCACCGCTGCGGTCTGGAAAGCACTCCGTCAAGCTAACGTGTTTTACTCCATCTCCGATACGGTTATGATAATAATGAGCTGTACCTTCCACACATCAGCTCTGAGCGATAGAGGCTCAAGTCATTGGCCGCAGAATGGGTCTATGATCCTCTACAACAGGAAGAAGGTGAAGTACAGAAAAGATGGCTACTGCTGGAAGAAGAGGAAAGATGGGAAAACCACGCGGGAGGATCACATGAAGCTCAAAGTGCAGGGAGTCGAGCCCTCCCCTCGCACCTCTGGCCGTGGCGCGGCGCGTCCCTGTGCGGATGACTCTAATGTGTCAGCTCAGGCGTGGCCCCTTTAAATGAAGAACCGTAATGAAGCATGTCTCCGGTCCCCGCGTTCCCGCTCACTGCCTCTAATGAAGAGAAATGTCAGCACATTGCCGATTTAGCGCCGTGATAGAACGAACCTACGGATGAGTGCAGCCGCGGCGGTCTCCTCTGATGCTCTACCTACATGAGTCGTTCACCTGAGCCGCACGCCCTGATCTGACTGAGCTTTATGAGGCCGGTTACAGACGGAGGCAACATTTAATGCATAAACATTGCTGATAGACATTTAGAAGGCATGTGTAGCATTTAAAGGAATGGATCCAAACATTACAGTTCTGTCTTTGTTTATTTACATTTGTCATTCCACACCACTGACTATGAAACACAAAATGAAATGTTGAGCCAAATGTCTGATCTGTTTTTTTCTATGCAGCTAGAGTTAATGGGAACTGCAGCTATCAAACTAAAAAAAATTACAAAAAAGCATCATAAAACTAGTCCATATGACTCCTGTGCTATATTCCAAATCTTCTAAAGTTATCCCATAATTATGACATGCAAGAACCAATGACGTTTGTCTTCACAAGACAAGCTTGAATATGTGCAAATGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU501531 lncRNA upstream 73962 10881107 ~ 10901365 (+) True G436958
TU501523 lncRNA upstream 148364 10807064 ~ 10826963 (+) True CI01000306_10775550_10815981
TU501522 lncRNA upstream 172514 10775060 ~ 10802813 (+) True G436949
TU501561 lncRNA upstream 211332 10763648 ~ 10763995 (+) True G436978
TU501558 lncRNA upstream 230503 10741924 ~ 10744824 (+) True G436976
TU501533 lncRNA downstream 13400 10990495 ~ 10998454 (+) True G436960
TU501566 lncRNA downstream 34629 11011724 ~ 11011998 (+) True G436983
TU501568 lncRNA downstream 49031 11026126 ~ 11026492 (+) True G436985
TU501569 lncRNA downstream 49961 11027056 ~ 11027361 (+) True G436986
TU501570 lncRNA downstream 51203 11028298 ~ 11028780 (+) True G436987
CI01000306_10775550_10815981.mRNA mRNA upstream 159251 10775346 ~ 10816076 (+) False CI01000306_10775550_10815981
CI01000306_10751001_10756733.mRNA mRNA upstream 218552 10750610 ~ 10756775 (+) True CI01000306_10751001_10756733
CI01000306_10738169_10739341.mRNA mRNA upstream 235438 10738169 ~ 10739889 (+) False CI01000306_10738169_10739341
CI01000306_10564069_10568262.mRNA mRNA upstream 406770 10562840 ~ 10568557 (+) True CI01000306_10564069_10568262
CI01000306_10548464_10549530.mRNA mRNA upstream 425700 10548464 ~ 10549627 (+) True CI01000306_10548464_10549530
CI01000306_11052174_11076357.mRNA mRNA downstream 75079 11052174 ~ 11076496 (+) True CI01000306_11052174_11076357
CI01000306_11107383_11122980.mRNA mRNA downstream 130204 11107299 ~ 11123375 (+) True CI01000306_11107383_11122980
CI01000306_11139228_11152171.mRNA mRNA downstream 162133 11139228 ~ 11152218 (+) True CI01000306_11139228_11152171
CI01000306_11181222_11192574.mRNA mRNA downstream 204127 11181222 ~ 11192640 (+) True CI01000306_11181222_11192574
CI01000306_11202677_11210993.mRNA mRNA downstream 224514 11201609 ~ 11211208 (+) False CI01000306_11202677_11210993
TU500080 other upstream 1082088 9891990 ~ 9892016 (+) True G435641
TU500075 other upstream 1090408 9879920 ~ 9884919 (+) True G435639
TU500059 other upstream 1112138 9860480 ~ 9863189 (+) False CI01000306_09860935_09865155
TU501503 other downstream 105893 11082988 ~ 11098033 (+) False G436932
TU501504 other downstream 105893 11082988 ~ 11098376 (+) True G436932
TU501617 other downstream 292663 11269758 ~ 11271160 (+) True G437030

Expression Profile