RNA id: TU494041


Basic Information

Item Value
RNA id TU494041
length 232
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G430268
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 212122 ~ 212353 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTATTGAACTATCTTGGATTTTATTAAAATATTTTAGCTCAGAGTGTTTCTGGAGATGAAAGAGTTTGTGTGGCGCTAGCATCAGTAAGAACATGAACTGATACAATCATGTGACCGTCATGTGACCGTCATCACCGCAGGTCAGTTCGTCGAGAGCGAGCCGTAATGAGAAATCAGTCAGCCTTCATGTCAGTTCAAACCGCACAGAGCGGCTCACGCAGCCTCCGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494013 lncRNA upstream 45747 155063 ~ 166375 (+) True G430245
TU493794 lncRNA upstream 142650 25238 ~ 69472 (+) False G430036
TU494042 lncRNA downstream 979 213332 ~ 213645 (+) True G430269
TU494043 lncRNA downstream 1708 214061 ~ 214314 (+) True G430270
TU494044 lncRNA downstream 5236 217589 ~ 217842 (+) True G430271
TU494047 lncRNA downstream 5534 217887 ~ 229552 (+) True G430272
TU494058 lncRNA downstream 18466 230819 ~ 231095 (+) True G430283
CI01000306_00135679_00139917.mRNA mRNA upstream 71668 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 93162 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 147970 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00235686_00242814.mRNA mRNA downstream 23094 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 32788 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 67305 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 73476 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 85553 297906 ~ 319419 (+) True CI01000306_00297906_00319127
TU494062 other downstream 23261 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 24558 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 713191 925544 ~ 999902 (+) True G430409
TU494250 other downstream 938244 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 997380 1218095 ~ 1218557 (+) True G430124

Expression Profile