RNA id: TU494042


Basic Information

Item Value
RNA id TU494042
length 314
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G430269
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 213332 ~ 213645 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAAATGACCTCACATTCACTGACACACATCTGTAAACACGTCCGGAGTGTTTGATTTGGCGTCGACGAACATTCACTCACACGAGAAGATCAATGAAACACAGACGACACACACACACACACACACACACACATCAGATCTACAGATAACCAGCATGGGTTTGAGATTCTGGTGATTAAACTGACCTCAGCAGGACTGGAGAGCGTCTCTCTCACATTCACTCTCATGATCAGAGCTGAAGCCTGAATGAAGATCTCCAGTTATAAACAAACGTTCTTCCAGCAACGTTAAAAGAACATTGTTCAAAGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494041 lncRNA upstream 979 212122 ~ 212353 (+) True G430268
TU494013 lncRNA upstream 46957 155063 ~ 166375 (+) True G430245
TU493794 lncRNA upstream 143860 25238 ~ 69472 (+) False G430036
TU494043 lncRNA downstream 416 214061 ~ 214314 (+) True G430270
TU494044 lncRNA downstream 3944 217589 ~ 217842 (+) True G430271
TU494047 lncRNA downstream 4242 217887 ~ 229552 (+) True G430272
TU494058 lncRNA downstream 17174 230819 ~ 231095 (+) True G430283
TU493975 lncRNA downstream 54130 267775 ~ 337110 (+) True G430207
CI01000306_00135679_00139917.mRNA mRNA upstream 72878 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 94372 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 149180 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00235686_00242814.mRNA mRNA downstream 21802 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 31496 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 66013 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 72184 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 84261 297906 ~ 319419 (+) True CI01000306_00297906_00319127
TU494062 other downstream 21969 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 23266 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 711899 925544 ~ 999902 (+) True G430409
TU494250 other downstream 936952 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 996088 1218095 ~ 1218557 (+) True G430124

Expression Profile