RNA id: TU494044


Basic Information

Item Value
RNA id TU494044
length 254
lncRNA type intronic
GC content 0.45
exon number 1
gene id G430271
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 217589 ~ 217842 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATTCTCCAGCTTTGTTGTTGTTGAGCTTTTAAAGCTCCGCCCTCTTCTGGAAAGGGGGCGGGAGCAGCAGCTCATTTGCATTTAAAGGGACACACACAAAAACGGCGTGTTTTTGCTCACACCCAAATAGGGGCAAATTTGACAAGCTATAATAAATGATCTGTGGGGGATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCAGAGACTGATATTACATCTTGTGAAAGGAGCATTATAGGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494043 lncRNA upstream 3275 214061 ~ 214314 (+) True G430270
TU494042 lncRNA upstream 3944 213332 ~ 213645 (+) True G430269
TU494041 lncRNA upstream 5236 212122 ~ 212353 (+) True G430268
TU494013 lncRNA upstream 51214 155063 ~ 166375 (+) True G430245
TU493794 lncRNA upstream 148117 25238 ~ 69472 (+) False G430036
TU494047 lncRNA downstream 45 217887 ~ 229552 (+) True G430272
TU494058 lncRNA downstream 12977 230819 ~ 231095 (+) True G430283
TU493975 lncRNA downstream 49933 267775 ~ 337110 (+) True G430207
TU494074 lncRNA downstream 50400 268242 ~ 268866 (+) True G430297
TU494079 lncRNA downstream 135634 354135 ~ 354225 (+) True G430302
CI01000306_00135679_00139917.mRNA mRNA upstream 77135 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 98629 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 153437 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00235686_00242814.mRNA mRNA downstream 17605 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 27299 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 61816 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 67987 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 80064 297906 ~ 319419 (+) True CI01000306_00297906_00319127
TU494062 other downstream 17772 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 19069 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 707702 925544 ~ 999902 (+) True G430409
TU494250 other downstream 932755 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 991891 1218095 ~ 1218557 (+) True G430124

Expression Profile