Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU494047 |
| length | 719 |
| lncRNA type | antisense_over |
| GC content | 0.52 |
| exon number | 2 |
| gene id | G430272 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 217887 ~ 229552 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU494044 | lncRNA | upstream | 45 | 217589 ~ 217842 (+) | True | G430271 |
| TU494043 | lncRNA | upstream | 3573 | 214061 ~ 214314 (+) | True | G430270 |
| TU494042 | lncRNA | upstream | 4242 | 213332 ~ 213645 (+) | True | G430269 |
| TU494041 | lncRNA | upstream | 5534 | 212122 ~ 212353 (+) | True | G430268 |
| TU494013 | lncRNA | upstream | 51512 | 155063 ~ 166375 (+) | True | G430245 |
| TU494058 | lncRNA | downstream | 1267 | 230819 ~ 231095 (+) | True | G430283 |
| TU493975 | lncRNA | downstream | 38223 | 267775 ~ 337110 (+) | True | G430207 |
| TU494074 | lncRNA | downstream | 38690 | 268242 ~ 268866 (+) | True | G430297 |
| TU494079 | lncRNA | downstream | 123924 | 354135 ~ 354225 (+) | True | G430302 |
| TU494081 | lncRNA | downstream | 188256 | 417808 ~ 418042 (+) | True | G430303 |
| CI01000306_00135679_00139917.mRNA | mRNA | upstream | 77433 | 135500 ~ 140454 (+) | True | CI01000306_00135679_00139917 |
| CI01000306_00107710_00118177.mRNA | mRNA | upstream | 98927 | 106737 ~ 118960 (+) | True | CI01000306_00107710_00118177 |
| CI01000306_00044391_00064128.mRNA | mRNA | upstream | 153735 | 43677 ~ 64152 (+) | False | CI01000306_00044391_00064128 |
| CI01000306_00235686_00242814.mRNA | mRNA | downstream | 5895 | 235447 ~ 242861 (+) | False | CI01000306_00235686_00242814 |
| CI01000306_00245734_00262949.mRNA | mRNA | downstream | 15589 | 245141 ~ 263251 (+) | True | CI01000306_00245734_00262949 |
| CI01000306_00279658_00285330.mRNA | mRNA | downstream | 50106 | 279658 ~ 285494 (+) | True | CI01000306_00279658_00285330 |
| CI01000306_00285981_00288513.mRNA | mRNA | downstream | 56277 | 285829 ~ 288715 (+) | True | CI01000306_00285981_00288513 |
| CI01000306_00297906_00319127.mRNA | mRNA | downstream | 68354 | 297906 ~ 319419 (+) | True | CI01000306_00297906_00319127 |
| TU494062 | other | downstream | 6062 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
| TU494061 | other | downstream | 7359 | 236911 ~ 237369 (+) | True | CI01000306_00235686_00242814 |
| TU494205 | other | downstream | 695992 | 925544 ~ 999902 (+) | True | G430409 |
| TU494250 | other | downstream | 921045 | 1150597 ~ 1150938 (+) | True | G430452 |
| TU493892 | other | downstream | 980181 | 1218095 ~ 1218557 (+) | True | G430124 |
