RNA id: TU494058


Basic Information

Item Value
RNA id TU494058
length 277
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G430283
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 230819 ~ 231095 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCACATCACTGACAGCCGATCACACACTCGCTGTGAACAGGTCTGATACTCACGTCCCAGCGTCCCGTTCCTCTCCGCCAGTGTTTTTCCTGAGAAACGCAGCAGATGCGAGTCCAGTCGTGTCCAAGTTTCCATCTCTCGTGTCTCATTTCTAGTCGGCTCTTTTCTATTTGCGTCTCTCTTCTAATTCAGGAGCTCGCTGCACCTGAGGGGACGAAAACATCCAACTAAAGTTAGCTCTTGTATTTCCCCGTCTTTACTCCGCAGTGGACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494047 lncRNA upstream 1267 217887 ~ 229552 (+) True G430272
TU494044 lncRNA upstream 12977 217589 ~ 217842 (+) True G430271
TU494043 lncRNA upstream 16505 214061 ~ 214314 (+) True G430270
TU494042 lncRNA upstream 17174 213332 ~ 213645 (+) True G430269
TU494041 lncRNA upstream 18466 212122 ~ 212353 (+) True G430268
TU493975 lncRNA downstream 36680 267775 ~ 337110 (+) True G430207
TU494074 lncRNA downstream 37147 268242 ~ 268866 (+) True G430297
TU494079 lncRNA downstream 122381 354135 ~ 354225 (+) True G430302
TU494081 lncRNA downstream 186713 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 217949 449044 ~ 483614 (+) False G430067
CI01000306_00135679_00139917.mRNA mRNA upstream 90365 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 111859 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 166667 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00235686_00242814.mRNA mRNA downstream 4352 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00245734_00262949.mRNA mRNA downstream 14046 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00279658_00285330.mRNA mRNA downstream 48563 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 54734 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 66811 297906 ~ 319419 (+) True CI01000306_00297906_00319127
TU494062 other downstream 4519 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494061 other downstream 5816 236911 ~ 237369 (+) True CI01000306_00235686_00242814
TU494205 other downstream 694449 925544 ~ 999902 (+) True G430409
TU494250 other downstream 919502 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 978638 1218095 ~ 1218557 (+) True G430124

Expression Profile