RNA id: TU494074


Basic Information

Item Value
RNA id TU494074
length 339
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G430297
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 268242 ~ 268866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGCACAGTCTGGCCTTGAGTGTGACTTCTGCAAAGCCTCGAGTCCATCCTCTGGAACATGCTCACAATTTATCCTGAGTTCACTCAGACTCGGGCAGTTTTCACTGAGAGAGATGATTTGACTAATGCAATGCTTAGTCAGATTGTACACACTCAGTTCCATCTTTTTCAATCCAGGCAAAGATTGGAGGGAGAGCAGTGGCATATCTTCGGTCCAGTCTTTAATTTCTGTCCAAGTTTGAATTTCTCGAAAGATGTTTGTCCAGTCAAAGTTAATTATACTGGATTGTAGAAACGTGAGGGTGAATTCAGGCATAACGGTTCTGTTTGTATGAATATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494058 lncRNA upstream 37147 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 38690 217887 ~ 229552 (+) True G430272
TU494044 lncRNA upstream 50400 217589 ~ 217842 (+) True G430271
TU494043 lncRNA upstream 53928 214061 ~ 214314 (+) True G430270
TU494042 lncRNA upstream 54597 213332 ~ 213645 (+) True G430269
TU494079 lncRNA downstream 84610 354135 ~ 354225 (+) True G430302
TU494081 lncRNA downstream 148942 417808 ~ 418042 (+) True G430303
TU493831 lncRNA downstream 180178 449044 ~ 483614 (+) False G430067
TU493830 lncRNA downstream 212948 481814 ~ 483614 (+) False G430067
TU493832 lncRNA downstream 212948 481814 ~ 483614 (+) True G430067
CI01000306_00245734_00262949.mRNA mRNA upstream 4991 245141 ~ 263251 (+) True CI01000306_00245734_00262949
CI01000306_00235686_00242814.mRNA mRNA upstream 25381 235447 ~ 242861 (+) False CI01000306_00235686_00242814
CI01000306_00135679_00139917.mRNA mRNA upstream 127788 135500 ~ 140454 (+) True CI01000306_00135679_00139917
CI01000306_00107710_00118177.mRNA mRNA upstream 149282 106737 ~ 118960 (+) True CI01000306_00107710_00118177
CI01000306_00044391_00064128.mRNA mRNA upstream 204090 43677 ~ 64152 (+) False CI01000306_00044391_00064128
CI01000306_00279658_00285330.mRNA mRNA downstream 10792 279658 ~ 285494 (+) True CI01000306_00279658_00285330
CI01000306_00285981_00288513.mRNA mRNA downstream 16963 285829 ~ 288715 (+) True CI01000306_00285981_00288513
CI01000306_00297906_00319127.mRNA mRNA downstream 29040 297906 ~ 319419 (+) True CI01000306_00297906_00319127
CI01000306_00327727_00330881.mRNA mRNA downstream 58861 327727 ~ 330932 (+) True CI01000306_00327727_00330881
CI01000306_00344942_00353683.mRNA mRNA downstream 75681 344547 ~ 354116 (+) False CI01000306_00344942_00353683
TU494062 other upstream 30873 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 656678 925544 ~ 999902 (+) True G430409
TU494250 other downstream 881731 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 940867 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1879516 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2704290 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile