RNA id: TU494081


Basic Information

Item Value
RNA id TU494081
length 235
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G430303
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 417808 ~ 418042 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGCACAGCTCTGTGAACAGCCAGCTCTTTCAGCAGTGACCCTCTGTGGCTTACCCTCATTGTAGAGGGTCTTGATGATCATCTTCTGGACAACTGTCAAGTCAGCAGACTTCCCCATGACTGCTGTTGGGATTACTGACCTAAACCCAGTATTTATACCCTGAGAATGGTCATTTAATAGAACTTGAAATTAAATATTCTAATAATTTGCGATACTGATTTTTTGATTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494079 lncRNA upstream 63583 354135 ~ 354225 (+) True G430302
TU493975 lncRNA upstream 80698 267775 ~ 337110 (+) True G430207
TU494074 lncRNA upstream 148942 268242 ~ 268866 (+) True G430297
TU494058 lncRNA upstream 186713 230819 ~ 231095 (+) True G430283
TU494047 lncRNA upstream 188256 217887 ~ 229552 (+) True G430272
TU493831 lncRNA downstream 31002 449044 ~ 483614 (+) False G430067
TU493830 lncRNA downstream 63772 481814 ~ 483614 (+) False G430067
TU493832 lncRNA downstream 63772 481814 ~ 483614 (+) True G430067
TU494087 lncRNA downstream 89390 507432 ~ 507773 (+) True G430309
TU494088 lncRNA downstream 106021 524063 ~ 524288 (+) True G430310
CI01000306_00399584_00413590.mRNA mRNA upstream 3680 399533 ~ 414128 (+) True CI01000306_00399584_00413590
CI01000306_00384380_00391350.mRNA mRNA upstream 25552 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00367856_00370281.mRNA mRNA upstream 46358 366422 ~ 371450 (+) True CI01000306_00367856_00370281
CI01000306_00344942_00353683.mRNA mRNA upstream 63692 344547 ~ 354116 (+) False CI01000306_00344942_00353683
CI01000306_00327727_00330881.mRNA mRNA upstream 86876 327727 ~ 330932 (+) True CI01000306_00327727_00330881
CI01000306_00424179_00424623.mRNA mRNA downstream 5734 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00442430_00460709.mRNA mRNA downstream 24388 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00496203_00497820.mRNA mRNA downstream 78161 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00534481_00545134.mRNA mRNA downstream 116439 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00546664_00553895.mRNA mRNA downstream 127623 545665 ~ 554101 (+) True CI01000306_00546664_00553895
TU494062 other upstream 180439 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 507502 925544 ~ 999902 (+) True G430409
TU494250 other downstream 732555 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 791691 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1730340 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2555114 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile