RNA id: TU494087


Basic Information

Item Value
RNA id TU494087
length 342
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G430309
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 507432 ~ 507773 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAAAACGCGTTTCGCGTCGAAGCTCTAGATGTCACTATCAGCACTAACATTATTTTCATGACCTCTTCTGCTCTGCCACACTTCACTATATTATTATACGATATTCATTCTCTCTGATACAGAAATGTCATTTGATAATGTTCTGACCGGTTTCAATCCAGCCGAGGCGATTTTAAATGTCACTGGACTGAACTGAAAGATTAAATTCACCCTTTCACACATGAATCAGGTTATTATGAAGAAACTGTTATTGCAATATGAAATATAAAAGGGCATATCAGGTTCTGTACTCAAAACCAAATGCAATGCAATAATACACAAAAGCAACAGTCAAATATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493831 lncRNA upstream 23818 449044 ~ 483614 (+) False G430067
TU493830 lncRNA upstream 23818 481814 ~ 483614 (+) False G430067
TU493832 lncRNA upstream 23818 481814 ~ 483614 (+) True G430067
TU494081 lncRNA upstream 89390 417808 ~ 418042 (+) True G430303
TU494079 lncRNA upstream 153207 354135 ~ 354225 (+) True G430302
TU494088 lncRNA downstream 16290 524063 ~ 524288 (+) True G430310
TU494089 lncRNA downstream 17354 525127 ~ 525334 (+) True G430311
TU494091 lncRNA downstream 18930 526703 ~ 526984 (+) True G430313
TU494092 lncRNA downstream 19977 527750 ~ 527982 (+) True G430314
TU493960 lncRNA downstream 20863 528636 ~ 533666 (+) True G430192
CI01000306_00496203_00497820.mRNA mRNA upstream 8972 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00442430_00460709.mRNA mRNA upstream 46249 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00424179_00424623.mRNA mRNA upstream 82634 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00399584_00413590.mRNA mRNA upstream 93304 399533 ~ 414128 (+) True CI01000306_00399584_00413590
CI01000306_00384380_00391350.mRNA mRNA upstream 115176 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00534481_00545134.mRNA mRNA downstream 26708 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00546664_00553895.mRNA mRNA downstream 37892 545665 ~ 554101 (+) True CI01000306_00546664_00553895
CI01000306_00571360_00574170.mRNA mRNA downstream 63490 571263 ~ 574535 (+) True CI01000306_00571360_00574170
CI01000306_00630572_00641931.mRNA mRNA downstream 122799 630572 ~ 642126 (+) True CI01000306_00630572_00641931
CI01000306_00664788_00672147.mRNA mRNA downstream 156948 664721 ~ 673052 (+) True CI01000306_00664788_00672147
TU494062 other upstream 270063 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 417771 925544 ~ 999902 (+) True G430409
TU494250 other downstream 642824 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 701960 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1640609 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2465383 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile