RNA id: TU495500


Basic Information

Item Value
RNA id TU495500
length 592
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G431568
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 520960 ~ 521551 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAACAAGCTTCCATACTGATATGAAGTCAAAGCAGCTTTCAGACTGATGTGTGCAGTGGTCTTTAGAAACTAACAGTACACCCTAAAACCATATTTACTCAGTTATTGTGTCGAAGAGCTGCTTTCTGCGTCCCCCAGCATGCTCTCGTGAAGATAAACATAGTCTACCAGCACATGACTGCAGTGAACGTGTGCGTCTCTGAACGGGTTTAGCCGGATCTCAAACTCTCAGCATGTGGAGTTGATCCTGGAACGGTTCTGAAGAAACTGAGCACGTGTTCAGCGCAGCGTGTGTCGGGTTGAGCTGCAGATAAGGCCTCATGTCTTAAAGCTAAAGCTGAAGGCTGAGCCTGAATTTGACCCCCACACACATTAGAAGATTAACCTTTGTGTACCGTTTCAATGACACAATCCCTTCCTGGGACTGCGAGGAAGCTTTGATTATTTATTATTTTAACCATATTTTAGTGCGCCTGTATTCAGTTTGACAGTTTTCCAGTCGTTTATTCATGCACAGCATCGTTGTGTTTTGATGCGAGCGCATGTAATATGAACACACTCTCTCGGGACACACGGCAGCTTCTCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495486 lncRNA downstream 102918 417797 ~ 418042 (-) True G431556
TU495481 lncRNA downstream 110245 410428 ~ 410715 (-) True G431551
TU495480 lncRNA downstream 111238 409457 ~ 409722 (-) True G431550
TU495476 lncRNA downstream 117401 403217 ~ 403559 (-) True G431546
TU495422 lncRNA downstream 335390 184011 ~ 185570 (-) False G431505
TU495381 lncRNA upstream 138493 660044 ~ 661145 (-) True G431475
TU495509 lncRNA upstream 178368 699919 ~ 700243 (-) True G431576
TU495392 lncRNA upstream 191356 712907 ~ 714529 (-) True G431486
TU495562 lncRNA upstream 262416 783967 ~ 785240 (-) True G431618
TU495554 lncRNA upstream 335577 857128 ~ 868493 (-) True G431611
CI01000306_00509647_00514228.mRNA mRNA downstream 6732 509294 ~ 514228 (-) True CI01000306_00509647_00514228
CI01000306_00498705_00504548.mRNA mRNA downstream 16412 498484 ~ 504548 (-) True CI01000306_00498705_00504548
CI01000306_00482506_00494090.mRNA mRNA downstream 26870 482482 ~ 494090 (-) False CI01000306_00482506_00494090
CI01000306_00474870_00478789.mRNA mRNA downstream 42045 474764 ~ 478915 (-) True CI01000306_00474870_00478789
CI01000306_00466878_00474566.mRNA mRNA downstream 46394 466713 ~ 474566 (-) True CI01000306_00466878_00474566
CI01000306_00554763_00557805.mRNA mRNA upstream 32888 554439 ~ 558193 (-) True CI01000306_00554763_00557805
CI01000306_00563449_00566897.mRNA mRNA upstream 41379 562930 ~ 566897 (-) True CI01000306_00563449_00566897
CI01000306_00566977_00570868.mRNA mRNA upstream 45426 566977 ~ 571035 (-) True CI01000306_00566977_00570868
CI01000306_00575882_00583996.mRNA mRNA upstream 54142 575693 ~ 584438 (-) True CI01000306_00575882_00583996
CI01000306_00588975_00600403.mRNA mRNA upstream 67411 588962 ~ 601346 (-) True CI01000306_00588975_00600403
TU495328 other downstream 37311 448704 ~ 483649 (-) False G431428
TU495679 other upstream 641476 1163027 ~ 1163338 (-) True G431706
TU495821 other upstream 790151 1311702 ~ 1312434 (-) False G431814
TU495726 other upstream 1196382 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 1196382 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 2478685 3000236 ~ 3003891 (-) True G432022

Expression Profile