RNA id: TU494088



Basic Information


Item Value
RNA id TU494088
length 226
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G430310
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 524063 ~ 524288 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCAGACAATGTGATCTTTTTAGATGTGGTAAACAGGTCAGGGAAGAGCTGTCAGACTATCTGGTTACTGAATACAACAGACGCCACCTAGAGGTGAGAGGTGTCGATGATGAATACTAAAATATTGCCTACTGTTGCTCAGAAATAGTGTGTGCAACAGTGCAGTGATAAAATGCTACAGCATCACATGACCTTGTTTATTTCAGTAAGTTATCAACTTAGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494087 lncRNA upstream 16290 507432 ~ 507773 (+) True G430309
TU493831 lncRNA upstream 40449 449044 ~ 483614 (+) False G430067
TU493830 lncRNA upstream 40449 481814 ~ 483614 (+) False G430067
TU493832 lncRNA upstream 40449 481814 ~ 483614 (+) True G430067
TU494081 lncRNA upstream 106021 417808 ~ 418042 (+) True G430303
TU494089 lncRNA downstream 839 525127 ~ 525334 (+) True G430311
TU494091 lncRNA downstream 2415 526703 ~ 526984 (+) True G430313
TU494092 lncRNA downstream 3462 527750 ~ 527982 (+) True G430314
TU493960 lncRNA downstream 4348 528636 ~ 533666 (+) True G430192
TU493957 lncRNA downstream 34264 558552 ~ 562512 (+) True G430189
CI01000306_00496203_00497820.mRNA mRNA upstream 25603 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00442430_00460709.mRNA mRNA upstream 62880 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00424179_00424623.mRNA mRNA upstream 99265 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00399584_00413590.mRNA mRNA upstream 109935 399533 ~ 414128 (+) True CI01000306_00399584_00413590
CI01000306_00384380_00391350.mRNA mRNA upstream 131807 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00534481_00545134.mRNA mRNA downstream 10193 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00546664_00553895.mRNA mRNA downstream 21377 545665 ~ 554101 (+) True CI01000306_00546664_00553895
CI01000306_00571360_00574170.mRNA mRNA downstream 46975 571263 ~ 574535 (+) True CI01000306_00571360_00574170
CI01000306_00630572_00641931.mRNA mRNA downstream 106284 630572 ~ 642126 (+) True CI01000306_00630572_00641931
CI01000306_00664788_00672147.mRNA mRNA downstream 140433 664721 ~ 673052 (+) True CI01000306_00664788_00672147
TU494062 other upstream 286694 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 401256 925544 ~ 999902 (+) True G430409
TU494250 other downstream 626309 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 685445 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1624094 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2448868 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile