RNA id: TU494089


Basic Information

Item Value
RNA id TU494089
length 208
lncRNA type inter_gene
GC content 0.12
exon number 1
gene id G430311
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 525127 ~ 525334 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTATATTTATTCTAATAATATTTACTTATTTTTAAAAAATATATTTATTTGTTTAGTTTAAGTTAAAGTACTAAACTTACTATAAATAAAACTGAAGACATAAATAAAAAATAATTAAAATGACAAAAACAAAAAAAATTAAAAAACTAATTCAAAATATTAATAAAAACTACATTAATTATAATAAATACATTATTTGCCATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494088 lncRNA upstream 839 524063 ~ 524288 (+) True G430310
TU494087 lncRNA upstream 17354 507432 ~ 507773 (+) True G430309
TU493831 lncRNA upstream 41513 449044 ~ 483614 (+) False G430067
TU493830 lncRNA upstream 41513 481814 ~ 483614 (+) False G430067
TU493832 lncRNA upstream 41513 481814 ~ 483614 (+) True G430067
TU494091 lncRNA downstream 1369 526703 ~ 526984 (+) True G430313
TU494092 lncRNA downstream 2416 527750 ~ 527982 (+) True G430314
TU493960 lncRNA downstream 3302 528636 ~ 533666 (+) True G430192
TU493957 lncRNA downstream 33218 558552 ~ 562512 (+) True G430189
TU493842 lncRNA downstream 39642 564976 ~ 647044 (+) True G430075
CI01000306_00496203_00497820.mRNA mRNA upstream 26667 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00442430_00460709.mRNA mRNA upstream 63944 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00424179_00424623.mRNA mRNA upstream 100329 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00399584_00413590.mRNA mRNA upstream 110999 399533 ~ 414128 (+) True CI01000306_00399584_00413590
CI01000306_00384380_00391350.mRNA mRNA upstream 132871 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00534481_00545134.mRNA mRNA downstream 9147 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00546664_00553895.mRNA mRNA downstream 20331 545665 ~ 554101 (+) True CI01000306_00546664_00553895
CI01000306_00571360_00574170.mRNA mRNA downstream 45929 571263 ~ 574535 (+) True CI01000306_00571360_00574170
CI01000306_00630572_00641931.mRNA mRNA downstream 105238 630572 ~ 642126 (+) True CI01000306_00630572_00641931
CI01000306_00664788_00672147.mRNA mRNA downstream 139387 664721 ~ 673052 (+) True CI01000306_00664788_00672147
TU494062 other upstream 287758 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 400210 925544 ~ 999902 (+) True G430409
TU494250 other downstream 625263 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 684399 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1623048 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2447822 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile