RNA id: TU494092


Basic Information

Item Value
RNA id TU494092
length 233
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G430314
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 527750 ~ 527982 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAACACTAAGTAAGAAAAGCAGTTTTCGCAGTGTGTGAACAGAAACTCAGGTCATGGTGATGATCTAGCGGCTCCAAACACATCCAACACGCTGTAAACACACAAGACATGAAAGATCTGGAGGGCCGTTTGACCCCTGAGAGCCTCCGTCTAAATGAAACACATCGTCTGTGTTTGGATCAGACGCATTCCCTGGAAAGATGGAAACATTTATCATCACTCACAAAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494091 lncRNA upstream 766 526703 ~ 526984 (+) True G430313
TU494089 lncRNA upstream 2416 525127 ~ 525334 (+) True G430311
TU494088 lncRNA upstream 3462 524063 ~ 524288 (+) True G430310
TU494087 lncRNA upstream 19977 507432 ~ 507773 (+) True G430309
TU493830 lncRNA upstream 44136 481814 ~ 483614 (+) False G430067
TU493960 lncRNA downstream 654 528636 ~ 533666 (+) True G430192
TU493957 lncRNA downstream 30570 558552 ~ 562512 (+) True G430189
TU493842 lncRNA downstream 36994 564976 ~ 647044 (+) True G430075
TU493863 lncRNA downstream 52269 580251 ~ 584121 (+) True G430095
TU493974 lncRNA downstream 77309 605291 ~ 608291 (+) True G430206
CI01000306_00496203_00497820.mRNA mRNA upstream 29290 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00442430_00460709.mRNA mRNA upstream 66567 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00424179_00424623.mRNA mRNA upstream 102952 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00399584_00413590.mRNA mRNA upstream 113622 399533 ~ 414128 (+) True CI01000306_00399584_00413590
CI01000306_00384380_00391350.mRNA mRNA upstream 135494 384030 ~ 392256 (+) True CI01000306_00384380_00391350
CI01000306_00534481_00545134.mRNA mRNA downstream 6499 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00546664_00553895.mRNA mRNA downstream 17683 545665 ~ 554101 (+) True CI01000306_00546664_00553895
CI01000306_00571360_00574170.mRNA mRNA downstream 43281 571263 ~ 574535 (+) True CI01000306_00571360_00574170
CI01000306_00630572_00641931.mRNA mRNA downstream 102590 630572 ~ 642126 (+) True CI01000306_00630572_00641931
CI01000306_00664788_00672147.mRNA mRNA downstream 136739 664721 ~ 673052 (+) True CI01000306_00664788_00672147
TU494062 other upstream 290381 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 397562 925544 ~ 999902 (+) True G430409
TU494250 other downstream 622615 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 681751 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1620400 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2445174 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile