RNA id: TU493957


Basic Information

Item Value
RNA id TU493957
length 2412
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G430189
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 558552 ~ 562512 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAATTAACATTCTTCTGAAGTTCAGCTAACAGCACGAAACCTACATAAAAAAACATTTAAAGTTGTACATTTAAAAGCAAAAGAAATCAAATTCATATTTATTTTAGTTATGCCAACCATAATCTGTTAAAAACAAAGAGACTTTTGGATCCAACTGTATGTAAAATATAAAATTACTCCATCATTCCCCAAAAAATAATGTTTTCTTAGTAAATAAGTCACATTAGAAGCTTGGATCAGTTTTGTCCCAATATTACAACTCACTTTTCTCTCAAAAACAAACTAATATAGTAATTGTAAAATACTAATAAACAAAAGGCCCCATTGAAGAAGAGCATGAATGATTCTCTACCTCTCTTTCTGCCTCTCATGTCTGGTGTTCATTCAGTGTTTGTCGTCTCTCTTGTGTCTTTATTATCAGTCCCTCCCAGAGCTCATCTGAGATCACTGAGCCGCGCAACAGTGACGAGGCAAATACTGAACCCTAACCTACTGAAATACACATCAACCTTCAGACTCAAAACCTGCAAATCACACAGATGCAGTGTGGCAGAGGTTACAGCTTTAAACTGCATAAAGCACCTCATTATTACATCCAAGACCACATTTGTTCTCTAAAGCGGTAATACCTTCAGAAATGTGAAACTTGATTTAAGAGTTCATTTGTTCTCAGGACCAACCTGAAGATTAAAGACTTGCTCTAATAATGAATTATACAGACTGTTCTTGCAACCCCTCTAAAGGTGTGTAGATCTGAGGTCAAGTTTCTCTTGGAAAAAAGCTGATTTGTTTGGTAAATGACTGAAAACAAGATTGAACATGAAGTTCTCTCTGTATCTAATCTCTCACAGAATCAATCAAATCAGACCAGCGGACAGAGTTCAACTATAAAACTCTATTAATAACATTCTATAACAAACTATAAAATCATGATTTCATTCAAAATGTAGAGAAAGTAACATTTTACTTGTAATGCGTTACTTTACTCGTTACATCAAAAAAGTAATTGATTACTAATGCGCGTTACTTGTAATGCGTTACTTTACTCATTACATCAAAAAAGTAATCAGATTACTAATGCGCGTTACTTGTAATGCGTTACTTTACTCATTATATTAAAAAAGTAATCAGATTACTAATGCGCGTTACTTGTAATGCGTTACTTTTCTCGTTACATCAAAAAAGTAATCAGATTACTAATGCACATTACTTGTAATGCGTTACTTTTCTCGTTACATCAAAAAAGTAATCAGATTACTAATGCGCGTTACTTGTAATGCGTTACTTTACTCATTATATCAAAAAGTAATCAGATTACTAATGCACATTACTTGTAATGCGTTACTTTACTCGTTACATCAAAAAAGTAATTGATTTCTAATGCATGTTACTTGTAATGCGTTACTTTACTCATTACATCAAAAAGTAATCAGATTACTAATGCACATTACTTGTAATGCGTTACTTTACTCGTTACATCAAAAAAGTAATCAGATTACTAATGCGCGTTACTTGTAATGCGTTACTTATTACATTAAAAAAGTAATCAGATTACTAATGCGCGTTACTTGTAATGCGTTACTTTACTCATTATATCAAAAAGTCATCAGATTACTAATGTGCGTTACTTGTAATGCGTTACCCCAACACTGCTCATTTCAGATGAGATTTGAAAACACCTGATCACTAGTTTTTTCACAGTCTGAAAACATCAGTAGATCAATTTATATTTCAGTCTAAGGTTTTCTCAGAGAGGAGAGCTACGGTAGAAATTTGTCTATTTTAAACAATCAGAATTGTCAGCTAATAAGTTTAAATCGACATACTCTGGTAGACTAGAGGAAGCGTGAGCGTTTTCTAAATAGTCGGAGTCTGGTTTCCACAGAGTTGGACTTTCACCAGTTGTAGAAATCTTTGATGGTATCACGTCTTCATGTTCTGATATCAAAGACACATGACATTCAACTTGTATGAAGTTTTTCTCTGTCTGCAGGTCGAGCAGAAACAAACTCAATTGCATTTGCAATAATTGAAGCTGCAGTTTTCACATGATTTTATATCATTTTATTCATTGATTTGTTAAAAAAACAGTATTACTGTGTTATTACTATTGTTTAATACAACATCTCTTTAGATAAAAAAAAAAAAAAAACCTGAGGTTGTCAATTCATGCATGAAAGGGTTAATAATACTTATATCTATTTCCTACTAACACACGGTTAAGCATTATATATTGCAGTAATGTTAGATCATGTTATTAGTGAAAGTTATTATAATGCGTAGCTGTTATTATAAATCGAGCTGGTAGTCTGTGAAGTCTGAAACTCTTGATATAATGTTACAGTATTTGTTAATATAAATGAAAGTTGTAATAATTTGCCAACTTTGATGATCATGCAATCAATCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU493960 lncRNA upstream 24886 528636 ~ 533666 (+) True G430192
TU494092 lncRNA upstream 30570 527750 ~ 527982 (+) True G430314
TU494091 lncRNA upstream 31568 526703 ~ 526984 (+) True G430313
TU494089 lncRNA upstream 33218 525127 ~ 525334 (+) True G430311
TU494088 lncRNA upstream 34264 524063 ~ 524288 (+) True G430310
TU493842 lncRNA downstream 2464 564976 ~ 647044 (+) True G430075
TU493863 lncRNA downstream 17739 580251 ~ 584121 (+) True G430095
TU493974 lncRNA downstream 42779 605291 ~ 608291 (+) True G430206
TU493938 lncRNA downstream 46235 608747 ~ 612591 (+) True G430170
TU494114 lncRNA downstream 139471 701983 ~ 702194 (+) True G430331
CI01000306_00546664_00553895.mRNA mRNA upstream 4451 545665 ~ 554101 (+) True CI01000306_00546664_00553895
CI01000306_00534481_00545134.mRNA mRNA upstream 13231 534481 ~ 545321 (+) True CI01000306_00534481_00545134
CI01000306_00496203_00497820.mRNA mRNA upstream 60092 496203 ~ 498460 (+) True CI01000306_00496203_00497820
CI01000306_00442430_00460709.mRNA mRNA upstream 97369 442430 ~ 461183 (+) True CI01000306_00442430_00460709
CI01000306_00424179_00424623.mRNA mRNA upstream 133754 423776 ~ 424798 (+) True CI01000306_00424179_00424623
CI01000306_00571360_00574170.mRNA mRNA downstream 8751 571263 ~ 574535 (+) True CI01000306_00571360_00574170
CI01000306_00630572_00641931.mRNA mRNA downstream 68060 630572 ~ 642126 (+) True CI01000306_00630572_00641931
CI01000306_00664788_00672147.mRNA mRNA downstream 102209 664721 ~ 673052 (+) True CI01000306_00664788_00672147
CI01000306_00681384_00689565.mRNA mRNA downstream 118872 681384 ~ 689812 (+) True CI01000306_00681384_00689565
CI01000306_00693218_00693943.mRNA mRNA downstream 130706 693218 ~ 694559 (+) True CI01000306_00693218_00693943
TU494062 other upstream 321183 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494205 other downstream 363032 925544 ~ 999902 (+) True G430409
TU494250 other downstream 588085 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 647221 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1585870 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 2410644 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718

Expression Profile