Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU493842 |
| length | 1150 |
| lncRNA type | read_through |
| GC content | 0.38 |
| exon number | 2 |
| gene id | G430075 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 564976 ~ 647044 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU493957 | lncRNA | upstream | 2464 | 558552 ~ 562512 (+) | True | G430189 |
| TU493960 | lncRNA | upstream | 31310 | 528636 ~ 533666 (+) | True | G430192 |
| TU494092 | lncRNA | upstream | 36994 | 527750 ~ 527982 (+) | True | G430314 |
| TU494091 | lncRNA | upstream | 37992 | 526703 ~ 526984 (+) | True | G430313 |
| TU494089 | lncRNA | upstream | 39642 | 525127 ~ 525334 (+) | True | G430311 |
| TU494114 | lncRNA | downstream | 54939 | 701983 ~ 702194 (+) | True | G430331 |
| TU494113 | lncRNA | downstream | 65514 | 712558 ~ 714524 (+) | True | CI01000306_00705287_00711760 |
| TU494118 | lncRNA | downstream | 82859 | 729903 ~ 730241 (+) | True | G430335 |
| TU494127 | lncRNA | downstream | 159473 | 806517 ~ 806752 (+) | True | G430344 |
| TU494180 | lncRNA | downstream | 260279 | 907323 ~ 913761 (+) | True | G430389 |
| CI01000306_00546664_00553895.mRNA | mRNA | upstream | 10875 | 545665 ~ 554101 (+) | True | CI01000306_00546664_00553895 |
| CI01000306_00534481_00545134.mRNA | mRNA | upstream | 19655 | 534481 ~ 545321 (+) | True | CI01000306_00534481_00545134 |
| CI01000306_00496203_00497820.mRNA | mRNA | upstream | 66516 | 496203 ~ 498460 (+) | True | CI01000306_00496203_00497820 |
| CI01000306_00442430_00460709.mRNA | mRNA | upstream | 103793 | 442430 ~ 461183 (+) | True | CI01000306_00442430_00460709 |
| CI01000306_00424179_00424623.mRNA | mRNA | upstream | 140178 | 423776 ~ 424798 (+) | True | CI01000306_00424179_00424623 |
| CI01000306_00664788_00672147.mRNA | mRNA | downstream | 17677 | 664721 ~ 673052 (+) | True | CI01000306_00664788_00672147 |
| CI01000306_00681384_00689565.mRNA | mRNA | downstream | 34340 | 681384 ~ 689812 (+) | True | CI01000306_00681384_00689565 |
| CI01000306_00693218_00693943.mRNA | mRNA | downstream | 46174 | 693218 ~ 694559 (+) | True | CI01000306_00693218_00693943 |
| CI01000306_00705287_00711760.mRNA | mRNA | downstream | 58243 | 705287 ~ 712585 (+) | False | CI01000306_00705287_00711760 |
| CI01000306_00730637_00781399.mRNA | mRNA | downstream | 83593 | 730637 ~ 781399 (+) | True | CI01000306_00730637_00781399 |
| TU494062 | other | upstream | 327607 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
| TU494205 | other | downstream | 278500 | 925544 ~ 999902 (+) | True | G430409 |
| TU494250 | other | downstream | 503553 | 1150597 ~ 1150938 (+) | True | G430452 |
| TU493892 | other | downstream | 562689 | 1218095 ~ 1218557 (+) | True | G430124 |
| TU494557 | other | downstream | 1501338 | 2148382 ~ 2150954 (+) | True | G430719 |
| TU494533 | other | downstream | 2326112 | 2973156 ~ 2979157 (+) | True | CI01000306_02974291_02976718 |
