Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU494205 |
| length | 1394 |
| RNA type | TUCP |
| GC content | 0.43 |
| exon number | 3 |
| gene id | G430409 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 925544 ~ 999902 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU494180 | lncRNA | upstream | 11783 | 907323 ~ 913761 (+) | True | G430389 |
| TU494127 | lncRNA | upstream | 118792 | 806517 ~ 806752 (+) | True | G430344 |
| TU494118 | lncRNA | upstream | 195303 | 729903 ~ 730241 (+) | True | G430335 |
| TU494113 | lncRNA | upstream | 211020 | 712558 ~ 714524 (+) | True | CI01000306_00705287_00711760 |
| TU494114 | lncRNA | upstream | 223350 | 701983 ~ 702194 (+) | True | G430331 |
| TU494194 | lncRNA | downstream | 2956 | 1002858 ~ 1026103 (+) | True | G430400 |
| TU494221 | lncRNA | downstream | 33318 | 1033220 ~ 1045108 (+) | True | G430425 |
| TU494230 | lncRNA | downstream | 70466 | 1070368 ~ 1071227 (+) | True | G430433 |
| TU494191 | lncRNA | downstream | 82626 | 1082528 ~ 1084265 (+) | True | G430397 |
| TU494231 | lncRNA | downstream | 95369 | 1095271 ~ 1095590 (+) | True | G430434 |
| CI01000306_00887579_00889885.mRNA | mRNA | upstream | 34836 | 887190 ~ 890708 (+) | True | CI01000306_00887579_00889885 |
| CI01000306_00730637_00781399.mRNA | mRNA | upstream | 144145 | 730637 ~ 781399 (+) | True | CI01000306_00730637_00781399 |
| CI01000306_00705287_00711760.mRNA | mRNA | upstream | 212959 | 705287 ~ 712585 (+) | False | CI01000306_00705287_00711760 |
| CI01000306_00693218_00693943.mRNA | mRNA | upstream | 230985 | 693218 ~ 694559 (+) | True | CI01000306_00693218_00693943 |
| CI01000306_00681384_00689565.mRNA | mRNA | upstream | 235732 | 681384 ~ 689812 (+) | True | CI01000306_00681384_00689565 |
| CI01000306_01008614_01011977.mRNA | mRNA | downstream | 8712 | 1008614 ~ 1011977 (+) | True | CI01000306_01008614_01011977 |
| CI01000306_01047698_01080329.mRNA | mRNA | downstream | 47796 | 1047698 ~ 1082259 (+) | True | CI01000306_01047698_01080329 |
| CI01000306_01209847_01210850.mRNA | mRNA | downstream | 209493 | 1209395 ~ 1211232 (+) | False | CI01000306_01209847_01210850 |
| CI01000306_01224349_01255175.mRNA | mRNA | downstream | 224248 | 1224150 ~ 1255472 (+) | True | CI01000306_01224349_01255175 |
| CI01000306_01278230_01279369.mRNA | mRNA | downstream | 278328 | 1278230 ~ 1279484 (+) | True | CI01000306_01278230_01279369 |
| TU494062 | other | upstream | 688175 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
| TU494250 | other | downstream | 150695 | 1150597 ~ 1150938 (+) | True | G430452 |
| TU493892 | other | downstream | 209831 | 1218095 ~ 1218557 (+) | True | G430124 |
| TU494557 | other | downstream | 1148480 | 2148382 ~ 2150954 (+) | True | G430719 |
| TU494533 | other | downstream | 1973254 | 2973156 ~ 2979157 (+) | True | CI01000306_02974291_02976718 |
| TU495068 | other | downstream | 2774242 | 3774144 ~ 3774262 (+) | True | G431188 |
