RNA id: TU494215


Basic Information

Item Value
RNA id TU494215
length 247
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G430419
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 984515 ~ 984938 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATGTTGAACGTTTCGATCAAAAAGCTGAGAAAATCTTATTTTTATCTGGATGGGATTCAGAGGGATGATCTAAACACAGATGGAGTAGATCGTTTCCTCTTCATGGGTTCAACATTTAATTCAGTAACGTTAGGCAGTTTTGATTTATATGCTGTTTAATGTTTGATGATCGCGATAATTTACATGTGCGTCAGCAATGCTTCTATCGCTTGTTTCTGCTTCTTCTTCGCCTGTGTTTTGATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494180 lncRNA upstream 70754 907323 ~ 913761 (+) True G430389
TU494127 lncRNA upstream 177763 806517 ~ 806752 (+) True G430344
TU494118 lncRNA upstream 254274 729903 ~ 730241 (+) True G430335
TU494113 lncRNA upstream 269991 712558 ~ 714524 (+) True CI01000306_00705287_00711760
TU494114 lncRNA upstream 282321 701983 ~ 702194 (+) True G430331
TU494194 lncRNA downstream 17920 1002858 ~ 1026103 (+) True G430400
TU494221 lncRNA downstream 48282 1033220 ~ 1045108 (+) True G430425
TU494230 lncRNA downstream 85430 1070368 ~ 1071227 (+) True G430433
TU494191 lncRNA downstream 97590 1082528 ~ 1084265 (+) True G430397
TU494231 lncRNA downstream 110333 1095271 ~ 1095590 (+) True G430434
CI01000306_00887579_00889885.mRNA mRNA upstream 93807 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 203116 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 271930 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_00693218_00693943.mRNA mRNA upstream 289956 693218 ~ 694559 (+) True CI01000306_00693218_00693943
CI01000306_00681384_00689565.mRNA mRNA upstream 294703 681384 ~ 689812 (+) True CI01000306_00681384_00689565
CI01000306_01008614_01011977.mRNA mRNA downstream 23676 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_01047698_01080329.mRNA mRNA downstream 62760 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01209847_01210850.mRNA mRNA downstream 224457 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 239212 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 293292 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
TU494062 other upstream 747146 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494250 other downstream 165659 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 224795 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1163444 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1988218 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2789206 3774144 ~ 3774262 (+) True G431188

Expression Profile