RNA id: TU494221



Basic Information


Item Value
RNA id TU494221
length 1043
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G430425
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1033220 ~ 1045108 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TATATAATGTATAATATAAATTATGTACAAAAGGGTCAATGATGTGAGGGGTCATTTTTTTGTCCAAAGGCCTTAATAATAATAAAAAACAAAGATATGACATCCAAAGTGTGTAAGGTAGTACAACTAGATCTCTTTTATTGAATCCAAAAGGTTTTAATTATATTTTGCTACATATAAAGGGATTTTAAAGATTTTGAAGTGTCAAAGGTCATTTGGTTTAACCGTCCAAAGGCCAATACAGCCATTTCATTTGTGATTAAAATATCTTAAAATGTAATAAATGTATATGTTTTTTATTCTGGCATGATTTTATAACATCATATATCAACATAGTGCAAAATGGTTGTAAAAATTTTGTGTAGAAGTCGTTGCTTTGTTATGAGAAAGAACGTCCGGAAAAATTAATTTCATTGATGTCATTCGGAGTAACCAATATAAAGGGACCATTTTGGATTAAGTCATGTGGTCAATATCATGTGACATCATTCAGACATCTGCAAAGGACCACATGGTCATGAAGCAAAGTAACTAACTCTCTCTTAACTATTTGAAAAACTAATGTTTTCACTTGTTCATACGCATGTCCCGAAACATCAGGTCATTCGGTACAACCGCTATAAAACATGGAAAATGTTGTAATATTTTAAAAACTTGAACTAAATATAAAATGTTTGATTGTCCTTTTGCTAGCTAGCTAGATATCAGCCTGTTAGCATTGTTTGAAAATATCGTCATTTGGTAAAACCAAAAGTGTCATTCGGTAAAACCGAAATTTTGGTCAAACCGAATGACTTTTTTGGTGACAAATTCTTGTAAAAAATGACAAAAGCAGTGTTAATTGATTATAAAAACCACAATCTCATTGTTAACACCTAATAAAACTTCAAAATTAATTATATCTCCATTGTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTGTTTGTTTTTCTTTAAGCAAGTTTATTTTACTGAGCTTAGTTTTTAACAGCAGATGGCACTGCCGTACTCTGCTTGCTTCCAATTCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494194 lncRNA upstream 7117 1002858 ~ 1026103 (+) True G430400
TU494215 lncRNA upstream 48282 984515 ~ 984938 (+) True G430419
TU494180 lncRNA upstream 119459 907323 ~ 913761 (+) True G430389
TU494127 lncRNA upstream 226468 806517 ~ 806752 (+) True G430344
TU494118 lncRNA upstream 302979 729903 ~ 730241 (+) True G430335
TU494230 lncRNA downstream 25260 1070368 ~ 1071227 (+) True G430433
TU494191 lncRNA downstream 37420 1082528 ~ 1084265 (+) True G430397
TU494231 lncRNA downstream 50163 1095271 ~ 1095590 (+) True G430434
TU494203 lncRNA downstream 71710 1116818 ~ 1119768 (+) True G430407
TU494258 lncRNA downstream 115874 1160982 ~ 1161492 (+) True G430460
CI01000306_01008614_01011977.mRNA mRNA upstream 21243 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 142512 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 251821 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 320635 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_00693218_00693943.mRNA mRNA upstream 338661 693218 ~ 694559 (+) True CI01000306_00693218_00693943
CI01000306_01047698_01080329.mRNA mRNA downstream 2590 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01209847_01210850.mRNA mRNA downstream 164287 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 179042 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 233122 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 248560 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
TU494205 other upstream 33318 925544 ~ 999902 (+) True G430409
TU494062 other upstream 795851 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494250 other downstream 105489 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 164625 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1103274 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1928048 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2729036 3774144 ~ 3774262 (+) True G431188

Expression Profile