RNA id: TU495655



Basic Information


Item Value
RNA id TU495655
length 1434
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G431683
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1051101 ~ 1057359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGAATATCATGAGGGTGAATAAACCTCTGAGAGAACAGTTCTGTGTTCGTGTGCGAGGAGGTTTGAGGAGGTCATATCCACCTACGATCACCACTTTTGAAGGAAAGCTCTACATGAGAAGATATACGTGACTGGCCACATTCACAAGGGCGGGAAGACTCACAATACTGAGGGGGTCTTGTTTGGATCCACTCTTTGGGGTCACAACGGGTCAGAGAGACACGCTAGAGCTCTATTACCTGCGTACGGGCTCATAGTTATTCCGTTCCTTTCTCCTACTGTAGTCACATAACAAACGTCACAAAAAGAGACACGAAGGACAGGCGGTTATTGACACTCATGTGTTAGAGGCCCTTTGGAAAGCAAATTCACATGAAGAGTACATCAGTTTCAGTTTGGATCCAGCCTCTTAAGAAGACCTCAGATGACTAAAACTTTGGAAGAGACGGCACCAACTCCTGCGATGACTTCAGAAGATGCAACATCTGGATCAACACGCACATTCGCAAATTTCTATATATCCTAATTATTGTTAATATGTAATTCATTTTTCCAGGAGCTCTTTGCTTCTACCTTCAATTAAATTGCTAACAGTGATTGTATGTTAATCGCCTAAATTATTACATTATTAGCTAACTGCAGTCTCCAAATTGTAATGTTGACATGCATTCTCTGTAAAGCTACTTTGAAACGATATGCATCGTGAAAAGCCCTATACAAATAAATGTGAATTGAATTGAATTGAATACTGTTGTCATTTTGCCATTTATTTAGACTCTGATGAAGGCTAAGGTTAAAGCTATAATTGGAGATTGTCTTTTGTAACACTGTGTTTTCATTAATTTGGCTAAAGTGGAAAGAGCAGTGGGCTTGGGTCCATAATCTGTTGACTCCAATGTGCTCCTAACACCTAAAGTGAGGTTGAATCTGCTCTTCACAGTGATTCTACTCAAAAACCAGGTTTTCGCCCATTATTGACCACTTGGGGTGTACAGATGGAGGAGGACCAGAACCTGAATAATAAGGATCCAAAACTACTAGCATAATTAAGAGACACTCCAGAAAGAACATCATTCAGGGGATTTTAATTCATTAATTCATTCTGCATTCACAAGCCAATTAAATGTTTGGGCATAGCCTATTTCTACGAATGAACGTAACTTCCGAACACAATGATCCAACTTAATGAAAATTGGAACATATGAACATCAGGACAATTAGAGGACACGCACCAATTTTCATCCAATTCTGTCCATGGGGGGGCGCTATAACTAGGAAATCCTGATGAATCTTCAACTTTGATCCAGCTTTTGGTTCTACCAAACTGTTGTCATTTTCTCTACTTTTGCCATTTAATTAGACTCTGATGAAGGCTTTTGTAACACTGTGTTTGTCATTAATTTGGCTAAAATGGAAATAGTAGTGGGCTTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU495602 lncRNA downstream 105047 907354 ~ 946054 (-) True G431639
TU495551 lncRNA downstream 152578 892864 ~ 895030 (-) True G431610
TU495554 lncRNA downstream 182608 857128 ~ 868493 (-) True G431611
TU495562 lncRNA downstream 265861 783967 ~ 785240 (-) True G431618
TU495392 lncRNA downstream 336572 712907 ~ 714529 (-) True G431486
TU495627 lncRNA upstream 25188 1082547 ~ 1084369 (-) True G431655
TU495672 lncRNA upstream 94438 1151797 ~ 1152039 (-) True G431699
TU495673 lncRNA upstream 94950 1152309 ~ 1152522 (-) True G431700
TU495678 lncRNA upstream 103458 1160817 ~ 1161597 (-) True G431705
TU495795 lncRNA upstream 124373 1181732 ~ 1182178 (-) True G431792
CI01000306_01024523_01027114.mRNA mRNA downstream 23970 1024340 ~ 1027131 (-) True CI01000306_01024523_01027114
CI01000306_01018942_01021787.mRNA mRNA downstream 29272 1018806 ~ 1021829 (-) True CI01000306_01018942_01021787
CI01000306_00993910_01003851.mRNA mRNA downstream 46534 991850 ~ 1004567 (-) True CI01000306_00993910_01003851
CI01000306_00896923_00897303.mRNA mRNA downstream 153457 896917 ~ 897644 (-) False CI01000306_00896923_00897303
CI01000306_00879678_00883167.mRNA mRNA downstream 167919 879503 ~ 883182 (-) True CI01000306_00879678_00883167
CI01000306_01086915_01093095.mRNA mRNA upstream 29409 1086768 ~ 1093101 (-) True CI01000306_01086915_01093095
CI01000306_01109880_01112379.mRNA mRNA upstream 52420 1109779 ~ 1112803 (-) True CI01000306_01109880_01112379
CI01000306_01120958_01127237.mRNA mRNA upstream 63457 1120816 ~ 1127560 (-) True CI01000306_01120958_01127237
CI01000306_01201604_01202608.mRNA mRNA upstream 143323 1200682 ~ 1204073 (-) True CI01000306_01201604_01202608
CI01000306_01284891_01287606.mRNA mRNA upstream 227464 1284823 ~ 1287630 (-) False CI01000306_01284891_01287606
TU495331 other downstream 567452 448704 ~ 483649 (-) False G431428
TU495679 other upstream 105668 1163027 ~ 1163338 (-) True G431706
TU495821 other upstream 254343 1311702 ~ 1312434 (-) False G431814
TU495726 other upstream 660574 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 660574 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1942877 3000236 ~ 3003891 (-) True G432022

Expression Profile