RNA id: TU494230



Basic Information


Item Value
RNA id TU494230
length 288
lncRNA type intronic
GC content 0.45
exon number 2
gene id G430433
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1070368 ~ 1071227 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTTGGGTTCATAATAAGCAAGAAATACAGTAATTTTTAAACAACCCATTCGCTGGGTTAAAACAGCCCAATCACTGGGTTAAAACAACCCAATCGCTGGGTTAAAACAGCCCAATCGCTGGGTTAAAACAGCCCAATCCCTGGGTTAAAACAACCCATTCCCTGGGTTAAAACAGCCCATTCCCTGGGTTAAAACAGCCCAATCCCTGGGTTAAAACAGCCCAATCGCTGGGTTAAAACACCCCAATCGCTGGGTTAAAACACCCCAATCGCTGGGTTAAAACAGC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494221 lncRNA upstream 25260 1033220 ~ 1045108 (+) True G430425
TU494194 lncRNA upstream 44265 1002858 ~ 1026103 (+) True G430400
TU494215 lncRNA upstream 85430 984515 ~ 984938 (+) True G430419
TU494180 lncRNA upstream 156607 907323 ~ 913761 (+) True G430389
TU494127 lncRNA upstream 263616 806517 ~ 806752 (+) True G430344
TU494191 lncRNA downstream 11301 1082528 ~ 1084265 (+) True G430397
TU494231 lncRNA downstream 24044 1095271 ~ 1095590 (+) True G430434
TU494203 lncRNA downstream 45591 1116818 ~ 1119768 (+) True G430407
TU494258 lncRNA downstream 89755 1160982 ~ 1161492 (+) True G430460
TU494260 lncRNA downstream 91784 1163011 ~ 1163321 (+) False G430462
CI01000306_01008614_01011977.mRNA mRNA upstream 58391 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 179660 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 288969 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 357783 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_00693218_00693943.mRNA mRNA upstream 375809 693218 ~ 694559 (+) True CI01000306_00693218_00693943
CI01000306_01209847_01210850.mRNA mRNA downstream 138168 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 152923 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 207003 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 222441 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 237201 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
TU494205 other upstream 70466 925544 ~ 999902 (+) True G430409
TU494062 other upstream 832999 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494250 other downstream 79370 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 138506 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1077155 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1901929 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2702917 3774144 ~ 3774262 (+) True G431188

Expression Profile