Item | Value |
---|---|
RNA id | TU494230 |
length | 288 |
lncRNA type | intronic |
GC content | 0.45 |
exon number | 2 |
gene id | G430433 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000306 |
NCBI id | null |
chromosome length | 11491657 |
location | 1070368 ~ 1071227 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU494221 | lncRNA | upstream | 25260 | 1033220 ~ 1045108 (+) | True | G430425 |
TU494194 | lncRNA | upstream | 44265 | 1002858 ~ 1026103 (+) | True | G430400 |
TU494215 | lncRNA | upstream | 85430 | 984515 ~ 984938 (+) | True | G430419 |
TU494180 | lncRNA | upstream | 156607 | 907323 ~ 913761 (+) | True | G430389 |
TU494127 | lncRNA | upstream | 263616 | 806517 ~ 806752 (+) | True | G430344 |
TU494191 | lncRNA | downstream | 11301 | 1082528 ~ 1084265 (+) | True | G430397 |
TU494231 | lncRNA | downstream | 24044 | 1095271 ~ 1095590 (+) | True | G430434 |
TU494203 | lncRNA | downstream | 45591 | 1116818 ~ 1119768 (+) | True | G430407 |
TU494258 | lncRNA | downstream | 89755 | 1160982 ~ 1161492 (+) | True | G430460 |
TU494260 | lncRNA | downstream | 91784 | 1163011 ~ 1163321 (+) | False | G430462 |
CI01000306_01008614_01011977.mRNA | mRNA | upstream | 58391 | 1008614 ~ 1011977 (+) | True | CI01000306_01008614_01011977 |
CI01000306_00887579_00889885.mRNA | mRNA | upstream | 179660 | 887190 ~ 890708 (+) | True | CI01000306_00887579_00889885 |
CI01000306_00730637_00781399.mRNA | mRNA | upstream | 288969 | 730637 ~ 781399 (+) | True | CI01000306_00730637_00781399 |
CI01000306_00705287_00711760.mRNA | mRNA | upstream | 357783 | 705287 ~ 712585 (+) | False | CI01000306_00705287_00711760 |
CI01000306_00693218_00693943.mRNA | mRNA | upstream | 375809 | 693218 ~ 694559 (+) | True | CI01000306_00693218_00693943 |
CI01000306_01209847_01210850.mRNA | mRNA | downstream | 138168 | 1209395 ~ 1211232 (+) | False | CI01000306_01209847_01210850 |
CI01000306_01224349_01255175.mRNA | mRNA | downstream | 152923 | 1224150 ~ 1255472 (+) | True | CI01000306_01224349_01255175 |
CI01000306_01278230_01279369.mRNA | mRNA | downstream | 207003 | 1278230 ~ 1279484 (+) | True | CI01000306_01278230_01279369 |
CI01000306_01293889_01308316.mRNA | mRNA | downstream | 222441 | 1293668 ~ 1308316 (+) | True | CI01000306_01293889_01308316 |
CI01000306_01308428_01312462.mRNA | mRNA | downstream | 237201 | 1308428 ~ 1312870 (+) | True | CI01000306_01308428_01312462 |
TU494205 | other | upstream | 70466 | 925544 ~ 999902 (+) | True | G430409 |
TU494062 | other | upstream | 832999 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
TU494250 | other | downstream | 79370 | 1150597 ~ 1150938 (+) | True | G430452 |
TU493892 | other | downstream | 138506 | 1218095 ~ 1218557 (+) | True | G430124 |
TU494557 | other | downstream | 1077155 | 2148382 ~ 2150954 (+) | True | G430719 |
TU494533 | other | downstream | 1901929 | 2973156 ~ 2979157 (+) | True | CI01000306_02974291_02976718 |
TU495068 | other | downstream | 2702917 | 3774144 ~ 3774262 (+) | True | G431188 |