RNA id: TU494191



Basic Information


Item Value
RNA id TU494191
length 1738
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G430397
representative True

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1082528 ~ 1084265 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATTTATACAAAATGTTTTATTAAGCTCTAGTTCTTTTTTACTCATTTAAAATTCTTAATTCATAACATGAATAATACGTAAGGATTATTCAATTCAATTTGATGGAATTTTACTATTAATTGAAATGCTCAAATCTTAAAACAGGCTAATATCTAGCTTACCTTTGGGGTTTGTTGCAACCGGCTCAAGACATTTAAATCCATCTGGATCCCTCAAAAACAGTGAAATCCCAGTCCGAGAGGTTTCTATTGGCCGTTTACTGAAGCCAATCAGGTTTTAGAGTGGCATATTGTCAATATAAGACAGAAACCAGGTTTGTTTTTTCCAGCACAATGACCATGAAGGGACTAAAGTGCATGTCAACATGTACAAACTTTTGTGATACGTTACAGACCTCAGTCAGGGACACATCCATACTTTTCCAGAACACTGAAATGCACAAAAACCTCATTCATGAGACATGAGCATCTCCATCTTACAACTAAAAAGTTGAGATTAATTCAGCTGGTGTTTCATGAATGAATTTGTACTTGAGTGAAATGAATCATGATGTATATCCAGACTATTATTATTACAGTATTTCATGTTTTCATACCTGCTGCTGCACATAGTTCCTCTAGATTGATGTGCCAGATTTGTTTAGCAGCCTGAAATAAAACTTTGCAGTAGTTTCTGTGTCCAACTGACACATCATGTCTGAAACCTTTATAAGCTGATGAGAGGTGTAGATCAGGTGTACAGTGAGATTTGCACTGATGGTTTTCACTTTTGTTTGTTTTTTGTTACTGTATTCTCTGGATGAAGATGAATCTGTTACCGGTTTGCATCAAGAACACGTAGTACGACTAACTGGATTCACCAAGTAACTGGTACTAAAATGGCGCCCAGTAACTTGAGAAATGAAATCGAACAGCCTCAGGTGTTCTTTTATTTTCCAAAAGACAAAAAAAATGTTTACATCTGCGTGTTTGTCATCTGTCATTTTTTTTACTTGTTTTTTTTCCTACATTTCTCATCGATGAAGACACAAAGGGTAAACTATGAAAGCTGTAGCTACAGCGTCTGTGCGTCGTTCATCGTAGCTACACGCCGGAGATACTGACGTCGATTTGTGTCTGCCCGCGCTTTTGAAGATCGTCGATGATGATCGGTGTGTGTGTGAATATTCTGTGAAGAAGTGAACGTGAGCACACGATATTGAAAAGTTGGATTTGTATATCCAAATTAAGGCCATTTCTTCGTTTCTGGACTGTCCCATTTTTCGGGGTTCCTCACCGGCTTCTTATTGAGTTAATGGCGTGAAGGTCTCTTCAGCATTTGGCGGTGAAGTAAAGAGCGGTGCGGGTATTTTTGTAAAATTGTACTGTTTGGAGATGCAAATGTTCAGCCTGTTGAAGTATTTGATACTAGTAATGTATTAAAGACGTGTCAAAGCTAGCTGTCGCTTAATGGATTTTTAATATATCATGACTTTGTTTTATATTAAGCTAAACATTAAGTTATGAAGCGCAGAATGTGTTTTAGAACGAAAACACTGGAGATGCAATTTTGCTCAGAGCTGTGCGTTATGCAAGAATGAATTACAGGATGATGTCTGTACAAACCTTGATTTCCAGCACAGTTCTGATGCCGATGTACAGTATGTTTGAGTGGATGAAAATGAGCTGTTTCTGTTCTTGTATTCTGCTCACATGCGGCTTCAACACTGTAGAAGGACTGATCTAGAACCCGTGTGA

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU494230 lncRNA upstream 11301 1070368 ~ 1071227 (+) True G430433
TU494221 lncRNA upstream 37420 1033220 ~ 1045108 (+) True G430425
TU494194 lncRNA upstream 56425 1002858 ~ 1026103 (+) True G430400
TU494215 lncRNA upstream 97590 984515 ~ 984938 (+) True G430419
TU494180 lncRNA upstream 168767 907323 ~ 913761 (+) True G430389
TU494231 lncRNA downstream 11006 1095271 ~ 1095590 (+) True G430434
TU494203 lncRNA downstream 32553 1116818 ~ 1119768 (+) True G430407
TU494258 lncRNA downstream 76717 1160982 ~ 1161492 (+) True G430460
TU494260 lncRNA downstream 78746 1163011 ~ 1163321 (+) False G430462
TU494262 lncRNA downstream 78746 1163011 ~ 1163473 (+) True G430462
CI01000306_01047698_01080329.mRNA mRNA upstream 269 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01008614_01011977.mRNA mRNA upstream 70551 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 191820 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 301129 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 369943 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_01209847_01210850.mRNA mRNA downstream 125130 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 139885 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 193965 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 209403 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 224163 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
TU494205 other upstream 82626 925544 ~ 999902 (+) True G430409
TU494062 other upstream 845159 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU494250 other downstream 66332 1150597 ~ 1150938 (+) True G430452
TU493892 other downstream 125468 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 1064117 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1888891 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2689879 3774144 ~ 3774262 (+) True G431188

Expression Profile