Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU494203 |
| length | 2951 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G430407 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1116818 ~ 1119768 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU494231 | lncRNA | upstream | 21228 | 1095271 ~ 1095590 (+) | True | G430434 |
| TU494191 | lncRNA | upstream | 32553 | 1082528 ~ 1084265 (+) | True | G430397 |
| TU494230 | lncRNA | upstream | 45591 | 1070368 ~ 1071227 (+) | True | G430433 |
| TU494221 | lncRNA | upstream | 71710 | 1033220 ~ 1045108 (+) | True | G430425 |
| TU494194 | lncRNA | upstream | 90715 | 1002858 ~ 1026103 (+) | True | G430400 |
| TU494258 | lncRNA | downstream | 41214 | 1160982 ~ 1161492 (+) | True | G430460 |
| TU494260 | lncRNA | downstream | 43243 | 1163011 ~ 1163321 (+) | False | G430462 |
| TU494262 | lncRNA | downstream | 43243 | 1163011 ~ 1163473 (+) | True | G430462 |
| TU494269 | lncRNA | downstream | 48244 | 1168012 ~ 1168563 (+) | False | G430467 |
| TU494268 | lncRNA | downstream | 48361 | 1168129 ~ 1168563 (+) | True | G430467 |
| CI01000306_01047698_01080329.mRNA | mRNA | upstream | 34559 | 1047698 ~ 1082259 (+) | True | CI01000306_01047698_01080329 |
| CI01000306_01008614_01011977.mRNA | mRNA | upstream | 104841 | 1008614 ~ 1011977 (+) | True | CI01000306_01008614_01011977 |
| CI01000306_00887579_00889885.mRNA | mRNA | upstream | 226110 | 887190 ~ 890708 (+) | True | CI01000306_00887579_00889885 |
| CI01000306_00730637_00781399.mRNA | mRNA | upstream | 335419 | 730637 ~ 781399 (+) | True | CI01000306_00730637_00781399 |
| CI01000306_00705287_00711760.mRNA | mRNA | upstream | 404233 | 705287 ~ 712585 (+) | False | CI01000306_00705287_00711760 |
| CI01000306_01209847_01210850.mRNA | mRNA | downstream | 89627 | 1209395 ~ 1211232 (+) | False | CI01000306_01209847_01210850 |
| CI01000306_01224349_01255175.mRNA | mRNA | downstream | 104382 | 1224150 ~ 1255472 (+) | True | CI01000306_01224349_01255175 |
| CI01000306_01278230_01279369.mRNA | mRNA | downstream | 158462 | 1278230 ~ 1279484 (+) | True | CI01000306_01278230_01279369 |
| CI01000306_01293889_01308316.mRNA | mRNA | downstream | 173900 | 1293668 ~ 1308316 (+) | True | CI01000306_01293889_01308316 |
| CI01000306_01308428_01312462.mRNA | mRNA | downstream | 188660 | 1308428 ~ 1312870 (+) | True | CI01000306_01308428_01312462 |
| TU494205 | other | upstream | 116916 | 925544 ~ 999902 (+) | True | G430409 |
| TU494062 | other | upstream | 879449 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
| TU494250 | other | downstream | 30829 | 1150597 ~ 1150938 (+) | True | G430452 |
| TU493892 | other | downstream | 89965 | 1218095 ~ 1218557 (+) | True | G430124 |
| TU494557 | other | downstream | 1028614 | 2148382 ~ 2150954 (+) | True | G430719 |
| TU494533 | other | downstream | 1853388 | 2973156 ~ 2979157 (+) | True | CI01000306_02974291_02976718 |
| TU495068 | other | downstream | 2654376 | 3774144 ~ 3774262 (+) | True | G431188 |
