RNA id: TU494258


Basic Information

Item Value
RNA id TU494258
length 511
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G430460
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1160982 ~ 1161492 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATTTGTCACCAAAAAGTCATTTGGTTTAACCAAAATTTCGGTTTTACTGAATGACACTTTTGGTTTTACCGAATGACGATATTTTCAAACAATGCTAACAGGCTGATATCTAGCTAGCTAGCAAAAGGACAATCAAACATTTTAAATTTAGTTCAAGTTTTTAAAATATTACAACATTTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCGGGACATGCGTATGAACAAGTGAAAACATGAATTTTTCAAATAGTTAACAGAGAGTTAGTTACTTTGCTTCATGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATGATATTGACCACATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCCGAATGACATCAATGAAATTCATTGTTCCGGACATTCTTTCTCATAACAAAGCAACGACTTCTACACATAATTTTAATACCATTTTGCACTATGTTGATATATGATGTTATAAAATCATGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494203 lncRNA upstream 41214 1116818 ~ 1119768 (+) True G430407
TU494231 lncRNA upstream 65392 1095271 ~ 1095590 (+) True G430434
TU494191 lncRNA upstream 76717 1082528 ~ 1084265 (+) True G430397
TU494230 lncRNA upstream 89755 1070368 ~ 1071227 (+) True G430433
TU494221 lncRNA upstream 115874 1033220 ~ 1045108 (+) True G430425
TU494260 lncRNA downstream 1519 1163011 ~ 1163321 (+) False G430462
TU494262 lncRNA downstream 1519 1163011 ~ 1163473 (+) True G430462
TU494269 lncRNA downstream 6520 1168012 ~ 1168563 (+) False G430467
TU494268 lncRNA downstream 6637 1168129 ~ 1168563 (+) True G430467
TU494272 lncRNA downstream 12194 1173686 ~ 1173906 (+) True G430470
CI01000306_01047698_01080329.mRNA mRNA upstream 78723 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01008614_01011977.mRNA mRNA upstream 149005 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 270274 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 379583 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 448397 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_01209847_01210850.mRNA mRNA downstream 47903 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 62658 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 116738 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 132176 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 146936 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
TU494250 other upstream 10044 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 161080 925544 ~ 999902 (+) True G430409
TU494062 other upstream 923613 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU493892 other downstream 48241 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 986890 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1811664 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2612652 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2612691 3774183 ~ 3774262 (+) True G431188

Expression Profile