RNA id: TU494262


Basic Information

Item Value
RNA id TU494262
length 463
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G430462
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1163011 ~ 1163473 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCCATTACAGTAGCATTCCTGTATGTGATGCAGTGCCGTCTAAGGGCCCAAAGATCACAGGCATCCTGTATGGTTTTCCGGCCTTGACCCTTACGCACAGAGATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATACACTGTAGATGATGATAACTTCAAACTCTTTGCAATTTTTCTCTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTCGCCGCAGCATTGGGGGAATTGGTGATCCTCTGTCCATCTTGACATCTGAGAGACACTGCCACTCTGAGAGGCTCTTTTTATACCCAATCATGTTGCCAATTGACCTAATAAGTTGCAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTTCCGGCCTCTTATTGCTACCTGTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494258 lncRNA upstream 1519 1160982 ~ 1161492 (+) True G430460
TU494203 lncRNA upstream 43243 1116818 ~ 1119768 (+) True G430407
TU494231 lncRNA upstream 67421 1095271 ~ 1095590 (+) True G430434
TU494191 lncRNA upstream 78746 1082528 ~ 1084265 (+) True G430397
TU494230 lncRNA upstream 91784 1070368 ~ 1071227 (+) True G430433
TU494269 lncRNA downstream 4539 1168012 ~ 1168563 (+) False G430467
TU494268 lncRNA downstream 4656 1168129 ~ 1168563 (+) True G430467
TU494272 lncRNA downstream 10213 1173686 ~ 1173906 (+) True G430470
TU494279 lncRNA downstream 29044 1192517 ~ 1192719 (+) True G430477
TU494280 lncRNA downstream 30275 1193748 ~ 1193960 (+) True G430478
CI01000306_01047698_01080329.mRNA mRNA upstream 80752 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01008614_01011977.mRNA mRNA upstream 151034 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 272303 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 381612 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 450426 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_01209847_01210850.mRNA mRNA downstream 45922 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 60677 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 114757 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 130195 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 144955 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
TU494250 other upstream 12073 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 163109 925544 ~ 999902 (+) True G430409
TU494062 other upstream 925642 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU493892 other downstream 46260 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 984909 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1809683 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2610671 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2610710 3774183 ~ 3774262 (+) True G431188

Expression Profile