RNA id: TU494269


Basic Information

Item Value
RNA id TU494269
length 237
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G430467
representative False

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1168012 ~ 1168563 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGATATAAAGTCAGAATTGCGAGTTATAAAGTCAGAATTGGGAGATATAAAGTCAGAATTGCGAGTTATAAAGTCAGAATTGTGAGATATAAAGTCAGAATTGCGAGTTATAAAGTCAGAATTGTGAGATATAAAGTCAGAATTGCGAGTTATAAAGTCAGAATTGTGAGATATAAAGTCAGAATTTCGAGTTATAAAGTCAGAATTGTGAGATATAAAGTCAGAATTTCGAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494262 lncRNA upstream 4539 1163011 ~ 1163473 (+) True G430462
TU494260 lncRNA upstream 4691 1163011 ~ 1163321 (+) False G430462
TU494258 lncRNA upstream 6520 1160982 ~ 1161492 (+) True G430460
TU494203 lncRNA upstream 48244 1116818 ~ 1119768 (+) True G430407
TU494231 lncRNA upstream 72422 1095271 ~ 1095590 (+) True G430434
TU494272 lncRNA downstream 5123 1173686 ~ 1173906 (+) True G430470
TU494279 lncRNA downstream 23954 1192517 ~ 1192719 (+) True G430477
TU494280 lncRNA downstream 25185 1193748 ~ 1193960 (+) True G430478
TU493881 lncRNA downstream 67782 1236345 ~ 1270115 (+) True G430113
TU493910 lncRNA downstream 116127 1284690 ~ 1286761 (+) True G430142
CI01000306_01047698_01080329.mRNA mRNA upstream 85753 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01008614_01011977.mRNA mRNA upstream 156035 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 277304 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 386613 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 455427 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_01209847_01210850.mRNA mRNA downstream 40832 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 55587 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 109667 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 125105 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 139865 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
TU494250 other upstream 17074 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 168110 925544 ~ 999902 (+) True G430409
TU494062 other upstream 930643 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU493892 other downstream 41170 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 979819 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1804593 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2605581 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2605620 3774183 ~ 3774262 (+) True G431188

Expression Profile