RNA id: TU494279


Basic Information

Item Value
RNA id TU494279
length 203
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G430477
representative True

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1192517 ~ 1192719 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGTTCAGACCGCGGCTGTCAGACTGAATACATGTTAGCATGACTGAACGAGGGGGGCAGAGAGACCCGAGGGTGGGCCACTTCTGCTGAATAAGACACTTCAACTCCACCCACCCAAAAAACCGTGCCAATAAATAATTCAGAGAATTACTAATGAAAAGGTTGAGGTAGAATACAGCAGTGTTTTAGCTGCACAGGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU494272 lncRNA upstream 18611 1173686 ~ 1173906 (+) True G430470
TU494269 lncRNA upstream 23954 1168012 ~ 1168563 (+) False G430467
TU494268 lncRNA upstream 23954 1168129 ~ 1168563 (+) True G430467
TU494262 lncRNA upstream 29044 1163011 ~ 1163473 (+) True G430462
TU494260 lncRNA upstream 29196 1163011 ~ 1163321 (+) False G430462
TU494280 lncRNA downstream 1029 1193748 ~ 1193960 (+) True G430478
TU493881 lncRNA downstream 43626 1236345 ~ 1270115 (+) True G430113
TU493910 lncRNA downstream 91971 1284690 ~ 1286761 (+) True G430142
TU493950 lncRNA downstream 96006 1288725 ~ 1289910 (+) True G430182
TU494292 lncRNA downstream 130344 1323063 ~ 1324428 (+) True G430489
CI01000306_01047698_01080329.mRNA mRNA upstream 110258 1047698 ~ 1082259 (+) True CI01000306_01047698_01080329
CI01000306_01008614_01011977.mRNA mRNA upstream 180540 1008614 ~ 1011977 (+) True CI01000306_01008614_01011977
CI01000306_00887579_00889885.mRNA mRNA upstream 301809 887190 ~ 890708 (+) True CI01000306_00887579_00889885
CI01000306_00730637_00781399.mRNA mRNA upstream 411118 730637 ~ 781399 (+) True CI01000306_00730637_00781399
CI01000306_00705287_00711760.mRNA mRNA upstream 479932 705287 ~ 712585 (+) False CI01000306_00705287_00711760
CI01000306_01209847_01210850.mRNA mRNA downstream 16676 1209395 ~ 1211232 (+) False CI01000306_01209847_01210850
CI01000306_01224349_01255175.mRNA mRNA downstream 31431 1224150 ~ 1255472 (+) True CI01000306_01224349_01255175
CI01000306_01278230_01279369.mRNA mRNA downstream 85511 1278230 ~ 1279484 (+) True CI01000306_01278230_01279369
CI01000306_01293889_01308316.mRNA mRNA downstream 100949 1293668 ~ 1308316 (+) True CI01000306_01293889_01308316
CI01000306_01308428_01312462.mRNA mRNA downstream 115709 1308428 ~ 1312870 (+) True CI01000306_01308428_01312462
TU494250 other upstream 41579 1150597 ~ 1150938 (+) True G430452
TU494205 other upstream 192615 925544 ~ 999902 (+) True G430409
TU494062 other upstream 955148 235614 ~ 237369 (+) False CI01000306_00235686_00242814
TU493892 other downstream 17014 1218095 ~ 1218557 (+) True G430124
TU494557 other downstream 955663 2148382 ~ 2150954 (+) True G430719
TU494533 other downstream 1780437 2973156 ~ 2979157 (+) True CI01000306_02974291_02976718
TU495068 other downstream 2581425 3774144 ~ 3774262 (+) True G431188
TU495067 other downstream 2581464 3774183 ~ 3774262 (+) True G431188

Expression Profile