Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU493881 |
| length | 1424 |
| lncRNA type | sense_over |
| GC content | 0.40 |
| exon number | 2 |
| gene id | G430113 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1236345 ~ 1270115 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU494280 | lncRNA | upstream | 42385 | 1193748 ~ 1193960 (+) | True | G430478 |
| TU494279 | lncRNA | upstream | 43626 | 1192517 ~ 1192719 (+) | True | G430477 |
| TU494272 | lncRNA | upstream | 62439 | 1173686 ~ 1173906 (+) | True | G430470 |
| TU494269 | lncRNA | upstream | 67782 | 1168012 ~ 1168563 (+) | False | G430467 |
| TU494268 | lncRNA | upstream | 67782 | 1168129 ~ 1168563 (+) | True | G430467 |
| TU493910 | lncRNA | downstream | 14575 | 1284690 ~ 1286761 (+) | True | G430142 |
| TU493950 | lncRNA | downstream | 18610 | 1288725 ~ 1289910 (+) | True | G430182 |
| TU494292 | lncRNA | downstream | 52948 | 1323063 ~ 1324428 (+) | True | G430489 |
| TU494295 | lncRNA | downstream | 114519 | 1384634 ~ 1384851 (+) | True | G430492 |
| TU494301 | lncRNA | downstream | 125637 | 1395752 ~ 1395970 (+) | True | G430497 |
| CI01000306_01209847_01210850.mRNA | mRNA | upstream | 25113 | 1209395 ~ 1211232 (+) | False | CI01000306_01209847_01210850 |
| CI01000306_01047698_01080329.mRNA | mRNA | upstream | 154086 | 1047698 ~ 1082259 (+) | True | CI01000306_01047698_01080329 |
| CI01000306_01008614_01011977.mRNA | mRNA | upstream | 224368 | 1008614 ~ 1011977 (+) | True | CI01000306_01008614_01011977 |
| CI01000306_00887579_00889885.mRNA | mRNA | upstream | 345637 | 887190 ~ 890708 (+) | True | CI01000306_00887579_00889885 |
| CI01000306_00730637_00781399.mRNA | mRNA | upstream | 454946 | 730637 ~ 781399 (+) | True | CI01000306_00730637_00781399 |
| CI01000306_01278230_01279369.mRNA | mRNA | downstream | 8115 | 1278230 ~ 1279484 (+) | True | CI01000306_01278230_01279369 |
| CI01000306_01293889_01308316.mRNA | mRNA | downstream | 23553 | 1293668 ~ 1308316 (+) | True | CI01000306_01293889_01308316 |
| CI01000306_01308428_01312462.mRNA | mRNA | downstream | 38313 | 1308428 ~ 1312870 (+) | True | CI01000306_01308428_01312462 |
| CI01000306_01315927_01321358.mRNA | mRNA | downstream | 45417 | 1315532 ~ 1322294 (+) | True | CI01000306_01315927_01321358 |
| CI01000306_01329678_01378388.mRNA | mRNA | downstream | 59563 | 1329678 ~ 1378510 (+) | True | CI01000306_01329678_01378388 |
| TU493892 | other | upstream | 17788 | 1218095 ~ 1218557 (+) | True | G430124 |
| TU494250 | other | upstream | 85407 | 1150597 ~ 1150938 (+) | True | G430452 |
| TU494205 | other | upstream | 236443 | 925544 ~ 999902 (+) | True | G430409 |
| TU494062 | other | upstream | 998976 | 235614 ~ 237369 (+) | False | CI01000306_00235686_00242814 |
| TU494557 | other | downstream | 878267 | 2148382 ~ 2150954 (+) | True | G430719 |
| TU494533 | other | downstream | 1703041 | 2973156 ~ 2979157 (+) | True | CI01000306_02974291_02976718 |
| TU495068 | other | downstream | 2504029 | 3774144 ~ 3774262 (+) | True | G431188 |
| TU495067 | other | downstream | 2504068 | 3774183 ~ 3774262 (+) | True | G431188 |
| TU495118 | other | downstream | 2507937 | 3778052 ~ 3783019 (+) | False | CI01000306_03778075_03781910 |
