RNA id: TU495841


Basic Information

Item Value
RNA id TU495841
length 680
lncRNA type read_through
GC content 0.53
exon number 3
gene id G431823
representative False

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1236441 ~ 1278686 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCAGCTGCTTGAAACGCCCCTCAAGCTGGTTGTAGTTGAAGGGCATTTGCGCGGGGAAGCTCGGCTCCTGGTAGAAGCCCTCGGGGCCCCCGGACGCCCACTCCAAATCCATGATCCCTGACCGAGAGGGAAACTATTTCCAGATTCCTCCCAGGAAACCACGGAATGGGAAGGAACAACAGAGTACGAAAAGCTCTTTTTTGCTCCTTCTTTCAGTGCTAGTTTAAATCCAAGATATCCGAAAGGTTTCCGTCCCAGTCTAATGTCCAAGAGGAGACGTGCATGCTGCTGTCTCTCTGATTGTTCGTCTTCCCACTCTATCCATTCAGAAGAGCGTCTCCCCCCAAACTCCAACACACAAACGCCCCTCCTCCTGTCACACTCAGAGGATGGGTTGGCCACAAACTCCTCTAGTCGACCCTGGTTTGAATCTGGAAGGGTTTCTGTGAGACACCAGCCAGAGCCTTGATGCGAGAGCGCTCGAATAATCGCGCCGAGCTGTTCTCATTGTCCCATTCGTCCTCCCAGCGGTTGTTGACACTGTCCTGGTATGTCTGCTGGATGTCCATGTGGTCGAATTCTGCGGCTACTGTCGTCATCCTGACCTCTGACCTTTCGGCTTTTCACCGTTCACACTTCCTCATGGGCGGCTTCCTCTGAAGCCCTGCGATAAACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU495817 lncRNA downstream 14081 1221861 ~ 1222360 (-) True G431810
TU495795 lncRNA downstream 54263 1181732 ~ 1182178 (-) True G431792
TU495678 lncRNA downstream 74844 1160817 ~ 1161597 (-) True G431705
TU495673 lncRNA downstream 83919 1152309 ~ 1152522 (-) True G431700
TU495672 lncRNA downstream 84402 1151797 ~ 1152039 (-) True G431699
TU495868 lncRNA upstream 832 1279518 ~ 1280070 (-) True G431849
TU495870 lncRNA upstream 5991 1284677 ~ 1284926 (-) True CI01000306_01284891_01287606
TU495871 lncRNA upstream 7898 1286584 ~ 1286787 (-) True G431852
TU495872 lncRNA upstream 11264 1289950 ~ 1290345 (-) True G431853
TU495827 lncRNA upstream 29345 1308031 ~ 1310878 (-) True G431815
CI01000306_01201604_01202608.mRNA mRNA downstream 32368 1200682 ~ 1204073 (-) True CI01000306_01201604_01202608
CI01000306_01120958_01127237.mRNA mRNA downstream 108881 1120816 ~ 1127560 (-) True CI01000306_01120958_01127237
CI01000306_01109880_01112379.mRNA mRNA downstream 123638 1109779 ~ 1112803 (-) True CI01000306_01109880_01112379
CI01000306_01086915_01093095.mRNA mRNA downstream 143340 1086768 ~ 1093101 (-) True CI01000306_01086915_01093095
CI01000306_01024523_01027114.mRNA mRNA downstream 209310 1024340 ~ 1027131 (-) True CI01000306_01024523_01027114
CI01000306_01284891_01287606.mRNA mRNA upstream 6137 1284823 ~ 1287630 (-) False CI01000306_01284891_01287606
CI01000306_01439864_01463150.mRNA mRNA upstream 161100 1439786 ~ 1463150 (-) True CI01000306_01439864_01463150
CI01000306_01469486_01475137.mRNA mRNA upstream 190102 1468788 ~ 1475137 (-) True CI01000306_01469486_01475137
CI01000306_01476783_01478195.mRNA mRNA upstream 197978 1476664 ~ 1478195 (-) True CI01000306_01476783_01478195
CI01000306_01483485_01492511.mRNA mRNA upstream 204186 1482872 ~ 1492511 (-) True CI01000306_01483485_01492511
TU495679 other downstream 73103 1163027 ~ 1163338 (-) True G431706
TU495332 other downstream 752792 448704 ~ 483649 (-) False G431428
TU495821 other upstream 33016 1311702 ~ 1312434 (-) False G431814
TU495726 other upstream 439247 1747526 ~ 1748222 (-) False G431728
TU495727 other upstream 439247 1748822 ~ 1748950 (-) True G431728
TU496065 other upstream 1721550 3000236 ~ 3003891 (-) True G432022
TU497393 other upstream 3264037 4542723 ~ 4545092 (-) True CI01000306_04544349_04545034

Expression Profile